Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   KE3_RS02815 Genome accession   NC_021900
Coordinates   517757..520042 (-) Length   761 a.a.
NCBI ID   WP_020916383.1    Uniprot ID   -
Organism   Streptococcus lutetiensis 033     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 512757..525042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS02800 (KE3_0569) ileS 513850..516648 (+) 2799 WP_020916380.1 isoleucine--tRNA ligase -
  KE3_RS02805 (KE3_0570) - 516735..517037 (-) 303 WP_020916381.1 DUF1827 family protein -
  KE3_RS02810 (KE3_0571) - 517109..517555 (-) 447 WP_020916382.1 NUDIX hydrolase -
  KE3_RS02815 (KE3_0572) clpE 517757..520042 (-) 2286 WP_020916383.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  KE3_RS02820 (KE3_0573) - 520182..520736 (-) 555 WP_043894983.1 DUF3278 domain-containing protein -
  KE3_RS02825 (KE3_0574) - 520745..520942 (-) 198 WP_020916385.1 helix-turn-helix transcriptional regulator -
  KE3_RS02830 (KE3_0575) argF 521099..522079 (+) 981 WP_043895203.1 ornithine carbamoyltransferase -
  KE3_RS02835 (KE3_0576) - 522196..522426 (+) 231 WP_004230761.1 DUF1797 family protein -
  KE3_RS02840 (KE3_0577) - 522737..523423 (+) 687 WP_020916387.1 amino acid ABC transporter permease -
  KE3_RS02845 (KE3_0578) - 523423..524157 (+) 735 WP_020916388.1 amino acid ABC transporter ATP-binding protein -
  KE3_RS02850 (KE3_0579) - 524521..524997 (+) 477 WP_020916389.1 ferrous iron transport protein A -

Sequence


Protein


Download         Length: 761 a.a.        Molecular weight: 84659.68 Da        Isoelectric Point: 4.9481

>NTDB_id=60819 KE3_RS02815 WP_020916383.1 517757..520042(-) (clpE) [Streptococcus lutetiensis 033]
MLCQNCHLNESTIHLYTNVNGQQKQIDLCQNCYQIMKTDPNNAILGGIGGNPQSSSNQTNQSSNPFDDFFNNLSGFPAFG
SQGFQNTPPTQSGEGNNNGRGGNGNNNFRPNGPAQQEPKGLLEEFGINVTDIARRGDIDPVIGRDAEIVRVIEILNRRTK
NNPVLIGEPGVGKTAVVEGLAQKIVDGNVPQKLQNKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRERKDVILFIDEI
HEIVGAGNAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQKKYEDY
HHVKYSDDAIEAAANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDKRLVQAENLKNQATREEDYERAAYFR
DQIAKYKEMQKQTINEDDIPVITEKTIEAIVEEKTNIPVGDLKEKEQSQLIHLADDLKEHVIGQDEAVDKIAKAIRRNRI
GLGTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRN
PYSLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGQLGDF
FSPEFMNRFDGIIEFKALSKDNLLHIVNLMLDDVNNRLATNDIHLEVTDKVKEKLVDLGYDPKMGARPLRRTIQDHIEDA
ITDFYLEHPTEKDLKAVMTSNGKIIIKSAKKVEKEETVSAE

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=60819 KE3_RS02815 WP_020916383.1 517757..520042(-) (clpE) [Streptococcus lutetiensis 033]
ATGCTCTGTCAAAATTGTCATTTAAATGAATCTACTATTCACCTGTATACAAATGTCAATGGTCAGCAAAAGCAAATTGA
TTTGTGCCAAAACTGCTATCAAATCATGAAAACTGACCCAAATAACGCTATTTTAGGAGGAATAGGAGGTAATCCTCAAT
CATCTTCTAACCAAACAAACCAATCATCGAACCCTTTCGACGATTTCTTTAATAATCTCAGCGGCTTCCCAGCATTTGGT
AGCCAAGGATTCCAAAATACTCCTCCAACTCAATCTGGTGAAGGTAATAATAACGGACGCGGTGGCAATGGCAACAACAA
TTTCCGCCCAAACGGACCAGCACAACAAGAACCTAAGGGCTTGCTAGAAGAATTTGGTATCAATGTTACTGATATCGCAC
GTCGTGGTGATATCGACCCTGTCATCGGACGTGATGCTGAAATTGTTCGTGTTATCGAAATTCTTAACCGCCGTACAAAA
AACAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACTGCCGTTGTTGAAGGATTAGCACAAAAAATTGTAGACGG
TAACGTTCCACAAAAACTCCAAAATAAACAAGTTATCCGCCTAGATGTGGTAAGTCTTGTTCAAGGAACTGGTATTCGTG
GTCAATTTGAAGAACGTATGCAAAAACTCATGGAAGAAATCCGTGAACGCAAAGACGTTATCCTCTTCATCGATGAAATC
CACGAAATTGTCGGTGCTGGTAATGCTGGTGACGGTAACATGGATGCTGGTAACATCTTGAAACCCGCTCTTGCTCGTGG
TGAGCTACAATTAGTTGGTGCAACTACTTTGAACGAATACCGCATCATTGAAAAAGATGCTGCGCTTGAACGTCGTATGC
AACCTGTAAAAGTTGACGAACCAAGCGTCGAAGAAACTATCACTATTCTTCGTGGTATTCAAAAGAAATATGAAGATTAT
CACCATGTCAAGTACAGTGATGATGCTATCGAAGCTGCTGCTAACCTCTCAAATCGCTACATTCAAGACCGTTTCCTTCC
AGATAAAGCTATCGACCTTCTCGATGAAGCTGGTTCTAAGATGAACTTGACACTTAACTTTGTTGATCCAAAAGAAATTG
ACAAACGTTTGGTGCAAGCTGAAAATCTAAAAAATCAAGCTACTCGTGAAGAAGATTATGAACGCGCAGCTTATTTTCGT
GATCAAATCGCTAAATACAAGGAAATGCAAAAACAAACCATCAACGAAGATGATATTCCAGTGATTACTGAAAAGACCAT
CGAGGCAATCGTTGAAGAAAAAACAAATATTCCTGTTGGTGACTTGAAAGAAAAAGAACAATCTCAATTAATTCACCTTG
CTGATGACTTGAAAGAACACGTTATTGGTCAAGACGAAGCTGTTGATAAGATTGCAAAAGCCATCCGTCGTAACCGTATT
GGTCTTGGTACACCAAACCGTCCAATTGGTTCATTCCTCTTCGTCGGTCCTACTGGTGTTGGTAAAACAGAACTTTCAAA
ACAACTTGCTATTGAACTCTTCGGCTCAGCTGATAGCATGATCCGCTTTGACATGTCTGAATACATGGAAAAACATGCAG
TCGCTAAACTTGTCGGAGCCCCTCCAGGATATGTTGGTTACGAAGAAGCTGGTCAATTGACTGAAAAAGTTCGTCGAAAC
CCATACTCACTCATCTTGCTTGATGAAGTTGAAAAGGCACACCCTGATGTCATGCACATGTTCTTGCAAGTTCTTGATGA
TGGTCGTTTAACTGACGGTCAAGGACGTACTGTAAGCTTTAAAGATACAATCATCATTATGACATCTAACGCTGGTACTG
GCAAAGTTGAAGCTTCTGTTGGTTTCGGTGCTGCTCGTGAAGGACGTACAAATTCTGTTCTTGGTCAACTTGGAGACTTC
TTTAGCCCTGAATTCATGAACCGTTTTGACGGTATTATCGAATTCAAAGCCCTAAGCAAAGATAATCTCCTTCATATCGT
TAACCTCATGCTTGACGACGTCAATAACCGTTTGGCAACTAACGATATTCACCTTGAAGTAACAGATAAAGTTAAAGAAA
AACTGGTTGACCTTGGATATGATCCTAAGATGGGTGCTCGTCCACTTCGTCGTACTATCCAAGATCACATCGAAGATGCT
ATTACAGACTTCTACCTTGAACACCCAACTGAAAAAGATTTGAAAGCTGTGATGACAAGCAATGGCAAAATCATCATCAA
ATCAGCTAAAAAAGTTGAAAAAGAAGAAACTGTTTCAGCAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

84.881

99.08

0.841

  clpE Streptococcus pneumoniae Rx1

83.134

98.949

0.823

  clpE Streptococcus pneumoniae D39

83.134

98.949

0.823

  clpE Streptococcus pneumoniae R6

83.134

98.949

0.823

  clpE Streptococcus pneumoniae TIGR4

83.134

98.949

0.823

  clpC Lactococcus lactis subsp. cremoris KW2

77.135

100

0.771

  clpC Bacillus subtilis subsp. subtilis str. 168

50.963

88.699

0.452

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.402

83.443

0.396

  clpC Streptococcus pneumoniae Rx1

47.756

81.997

0.392

  clpC Streptococcus pneumoniae D39

47.756

81.997

0.392

  clpC Streptococcus pneumoniae TIGR4

47.596

81.997

0.39

  clpC Streptococcus mutans UA159

47.087

81.209

0.382

  clpC Streptococcus thermophilus LMD-9

45.298

83.837

0.38

  clpC Streptococcus thermophilus LMG 18311

44.984

83.837

0.377


Multiple sequence alignment