Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD48_RS07485 Genome accession   NZ_CP083834
Coordinates   1575735..1576361 (+) Length   208 a.a.
NCBI ID   WP_033145121.1    Uniprot ID   A0A263VSI0
Organism   Enterobacter asburiae strain AR0468-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1570735..1581361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD48_RS07465 (LCD48_07465) - 1571135..1572895 (-) 1761 WP_039261614.1 Lon protease family protein -
  LCD48_RS07470 (LCD48_07470) matP 1573082..1573534 (+) 453 WP_039261615.1 macrodomain Ter protein MatP -
  LCD48_RS07475 (LCD48_07475) ompA 1573598..1574653 (-) 1056 WP_023311028.1 porin OmpA -
  LCD48_RS07480 (LCD48_07480) sulA 1575008..1575517 (-) 510 WP_045888947.1 SOS-induced cell division inhibitor SulA -
  LCD48_RS07485 (LCD48_07485) sxy/tfoX 1575735..1576361 (+) 627 WP_033145121.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD48_RS07490 (LCD48_07490) yccS 1576318..1578480 (-) 2163 WP_039261616.1 YccS family putative transporter -
  LCD48_RS07495 (LCD48_07495) - 1578500..1578946 (-) 447 WP_023311032.1 YccF domain-containing protein -
  LCD48_RS07500 (LCD48_07500) helD 1579070..1581124 (+) 2055 WP_039261617.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23876.44 Da        Isoelectric Point: 9.4588

>NTDB_id=608182 LCD48_RS07485 WP_033145121.1 1575735..1576361(+) (sxy/tfoX) [Enterobacter asburiae strain AR0468-yvys]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608182 LCD48_RS07485 WP_033145121.1 1575735..1576361(+) (sxy/tfoX) [Enterobacter asburiae strain AR0468-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTCCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGCTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAACGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCGGGCATCACCAATGAGGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTAAAGATGCGGGCAAAAAAC
AAAGCGCTCGGTATTAAAGTTCTTTTCGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VSI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567