Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD33_RS09045 Genome accession   NZ_CP100981
Coordinates   1890484..1891911 (-) Length   475 a.a.
NCBI ID   WP_072663247.1    Uniprot ID   -
Organism   Escherichia coli strain ET220     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1885484..1896911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD33_RS09015 (NMD33_08970) yeeZ 1885539..1886363 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD33_RS09020 (NMD33_08975) yeeY 1886409..1887338 (+) 930 WP_032084592.1 LysR substrate-binding domain-containing protein -
  NMD33_RS09025 (NMD33_08980) yoeI 1887553..1887615 (+) 63 WP_099451043.1 membrane protein YoeI -
  NMD33_RS09030 (NMD33_08985) plaP 1887605..1888963 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD33_RS09035 (NMD33_08990) tsuA 1889142..1890200 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD33_RS09040 (NMD33_08995) tsuB 1890214..1890441 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD33_RS09045 (NMD33_09000) sbcB 1890484..1891911 (-) 1428 WP_072663247.1 exodeoxyribonuclease I Machinery gene
  NMD33_RS09050 (NMD33_09005) dacD 1892120..1893286 (+) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD33_RS09055 (NMD33_09010) sbmC 1893405..1893878 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  NMD33_RS09060 (NMD33_09015) yeeA 1894076..1895134 (+) 1059 WP_001200905.1 FUSC family protein -
  NMD33_RS09065 (NMD33_09020) tmaR 1895306..1895635 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD33_RS09070 (NMD33_09025) - 1895736..1895918 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NMD33_RS09075 (NMD33_09030) - 1895990..1896118 (+) 129 Protein_1774 transposase domain-containing protein -
  NMD33_RS09080 (NMD33_09035) - 1896407..1896499 (-) 93 Protein_1775 DUF957 domain-containing protein -
  NMD33_RS09085 (NMD33_09040) yeeW 1896533..1896727 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54443.76 Da        Isoelectric Point: 5.3458

>NTDB_id=608178 NMD33_RS09045 WP_072663247.1 1890484..1891911(-) (sbcB) [Escherichia coli strain ET220]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEALAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=608178 NMD33_RS09045 WP_072663247.1 1890484..1891911(-) (sbcB) [Escherichia coli strain ET220]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACTGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581