Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD42_RS07595 Genome accession   NZ_CP083828
Coordinates   1634416..1635042 (+) Length   208 a.a.
NCBI ID   WP_032637053.1    Uniprot ID   A0AAJ6MNH4
Organism   Enterobacter kobei strain 11778-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629416..1640042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD42_RS07575 (LCD42_07585) - 1629814..1631574 (-) 1761 WP_200557795.1 AAA family ATPase -
  LCD42_RS07580 (LCD42_07590) matP 1631761..1632213 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  LCD42_RS07585 (LCD42_07595) ompA 1632278..1633333 (-) 1056 WP_014883252.1 porin OmpA -
  LCD42_RS07590 (LCD42_07600) sulA 1633689..1634198 (-) 510 WP_176260663.1 SOS-induced cell division inhibitor SulA -
  LCD42_RS07595 (LCD42_07605) sxy/tfoX 1634416..1635042 (+) 627 WP_032637053.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD42_RS07600 (LCD42_07610) yccS 1634999..1637161 (-) 2163 WP_023332614.1 YccS family putative transporter -
  LCD42_RS07605 (LCD42_07615) - 1637181..1637627 (-) 447 WP_014883256.1 YccF domain-containing protein -
  LCD42_RS07610 (LCD42_07620) helD 1637751..1639805 (+) 2055 WP_045269354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23930.53 Da        Isoelectric Point: 9.0691

>NTDB_id=608137 LCD42_RS07595 WP_032637053.1 1634416..1635042(+) (sxy/tfoX) [Enterobacter kobei strain 11778-yvys]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAIDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608137 LCD42_RS07595 WP_032637053.1 1634416..1635042(+) (sxy/tfoX) [Enterobacter kobei strain 11778-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCATT
GTTCGGTGGCTATACCCTGGCGATAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGCTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTTGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.143

97.596

0.558