Detailed information NTG0608133

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD34_RS21500
• Genome accession: NZ_CP100978
• Coordinates: 4382641..4383666 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET245
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4377641..4388666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD34_RS21480 (NMD34_21340)	metJ	4378702..4379019 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD34_RS21485 (NMD34_21345)	yiiX	4379203..4379811 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD34_RS21490 (NMD34_21350)	rpmE	4379872..4380084 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD34_RS21495 (NMD34_21355)	priA	4380287..4382485 (+)	2199	WP_001424430.1	primosomal protein N'	Machinery gene
NMD34_RS21500 (NMD34_21360)	cytR	4382641..4383666 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD34_RS21505 (NMD34_21365)	ftsN	4383758..4384717 (+)	960	WP_000068828.1	cell division protein FtsN	-
NMD34_RS21510 (NMD34_21370)	hslV	4384810..4385340 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD34_RS21515 (NMD34_21375)	hslU	4385350..4386681 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD34_RS21520 (NMD34_21380)	menA	4386748..4387674 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD34_RS21525 (NMD34_21385)	rraA	4387767..4388252 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD34_RS21530 (NMD34_21390)	zapB	4388337..4388582 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=608133 NMD34_RS21500 WP_000644904.1 4382641..4383666(+) (cytR) [Escherichia coli strain ET245]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=608133 NMD34_RS21500 WP_000644904.1 4382641..4383666(+) (cytR) [Escherichia coli strain ET245]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628