Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD47_RS07710 Genome accession   NZ_CP083821
Coordinates   1644013..1644639 (+) Length   208 a.a.
NCBI ID   WP_191979554.1    Uniprot ID   -
Organism   Enterobacter cloacae subsp. cloacae strain 12961-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639013..1649639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD47_RS07690 (LCD47_07700) - 1639413..1641173 (-) 1761 WP_028027913.1 Lon protease family protein -
  LCD47_RS07695 (LCD47_07705) matP 1641360..1641812 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  LCD47_RS07700 (LCD47_07710) ompA 1641876..1642931 (-) 1056 WP_044158562.1 porin OmpA -
  LCD47_RS07705 (LCD47_07715) sulA 1643286..1643795 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  LCD47_RS07710 (LCD47_07720) sxy/tfoX 1644013..1644639 (+) 627 WP_191979554.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD47_RS07715 (LCD47_07725) yccS 1644596..1646758 (-) 2163 WP_246935007.1 YccS family putative transporter -
  LCD47_RS07720 (LCD47_07730) - 1646778..1647224 (-) 447 WP_013097253.1 YccF domain-containing protein -
  LCD47_RS07725 (LCD47_07735) helD 1647347..1649401 (+) 2055 WP_230793841.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=608115 LCD47_RS07710 WP_191979554.1 1644013..1644639(+) (sxy/tfoX) [Enterobacter cloacae subsp. cloacae strain 12961-yvys]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERLQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608115 LCD47_RS07710 WP_191979554.1 1644013..1644639(+) (sxy/tfoX) [Enterobacter cloacae subsp. cloacae strain 12961-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACTCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCCTACAACGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567