Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD34_RS08790 Genome accession   NZ_CP100978
Coordinates   1813105..1814529 (-) Length   474 a.a.
NCBI ID   WP_073461659.1    Uniprot ID   -
Organism   Escherichia coli strain ET245     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808105..1819529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD34_RS08760 (NMD34_08715) yeeZ 1808160..1808984 (+) 825 WP_032202495.1 SDR family oxidoreductase -
  NMD34_RS08765 (NMD34_08720) yeeY 1809030..1809959 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NMD34_RS08770 (NMD34_08725) yoeI 1810174..1810236 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD34_RS08775 (NMD34_08730) plaP 1810226..1811584 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD34_RS08780 (NMD34_08735) tsuA 1811763..1812821 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD34_RS08785 (NMD34_08740) tsuB 1812835..1813062 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD34_RS08790 (NMD34_08745) sbcB 1813105..1814529 (-) 1425 WP_073461659.1 exodeoxyribonuclease I Machinery gene
  NMD34_RS08795 (NMD34_08750) - 1814711..1815889 (+) 1179 WP_097451079.1 site-specific integrase -
  NMD34_RS08800 (NMD34_08755) - 1815870..1816061 (-) 192 WP_000132739.1 AlpA family transcriptional regulator -
  NMD34_RS08805 (NMD34_08760) - 1816092..1816259 (-) 168 WP_370604815.1 hypothetical protein -
  NMD34_RS08810 (NMD34_08765) - 1816295..1816594 (-) 300 WP_122991674.1 hypothetical protein -
  NMD34_RS08815 (NMD34_08770) - 1816682..1816963 (-) 282 WP_370604817.1 hypothetical protein -
  NMD34_RS08820 (NMD34_08775) - 1817166..1817735 (-) 570 Protein_1723 ead/Ea22-like family protein -
  NMD34_RS08825 (NMD34_08780) - 1817704..1817958 (-) 255 WP_000071294.1 hypothetical protein -
  NMD34_RS08830 (NMD34_08785) - 1817955..1818122 (-) 168 Protein_1725 DUF2737 family protein -
  NMD34_RS08835 (NMD34_08790) - 1818133..1818426 (-) 294 WP_001111303.1 phage anti-RecBCD protein -
  NMD34_RS08840 (NMD34_08795) - 1818450..1818833 (-) 384 WP_167778131.1 hypothetical protein -
  NMD34_RS08845 (NMD34_08800) - 1818833..1819438 (-) 606 WP_000031367.1 ERF family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54382.62 Da        Isoelectric Point: 5.3498

>NTDB_id=608100 NMD34_RS08790 WP_073461659.1 1813105..1814529(-) (sbcB) [Escherichia coli strain ET245]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=608100 NMD34_RS08790 WP_073461659.1 1813105..1814529(-) (sbcB) [Escherichia coli strain ET245]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584