Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD41_RS07585 Genome accession   NZ_CP083819
Coordinates   1585979..1586605 (+) Length   208 a.a.
NCBI ID   WP_047745099.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain 13840-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580979..1591605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD41_RS07565 (LCD41_07580) - 1581378..1583138 (-) 1761 WP_247169961.1 Lon protease family protein -
  LCD41_RS07570 (LCD41_07585) matP 1583325..1583777 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  LCD41_RS07575 (LCD41_07590) ompA 1583842..1584897 (-) 1056 WP_045417251.1 porin OmpA -
  LCD41_RS07580 (LCD41_07595) sulA 1585252..1585761 (-) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  LCD41_RS07585 (LCD41_07600) sxy/tfoX 1585979..1586605 (+) 627 WP_047745099.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD41_RS07590 (LCD41_07605) yccS 1586562..1588724 (-) 2163 WP_047745100.1 YccS family putative transporter -
  LCD41_RS07595 (LCD41_07610) - 1588744..1589190 (-) 447 WP_008499924.1 YccF domain-containing protein -
  LCD41_RS07600 (LCD41_07615) helD 1589314..1591368 (+) 2055 WP_047745101.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23829.42 Da        Isoelectric Point: 9.7512

>NTDB_id=608094 LCD41_RS07585 WP_047745099.1 1585979..1586605(+) (sxy/tfoX) [Enterobacter roggenkampii strain 13840-yvys]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGGLYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608094 LCD41_RS07585 WP_047745099.1 1585979..1586605(+) (sxy/tfoX) [Enterobacter roggenkampii strain 13840-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGGACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGCCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCGCTCCCGGCAGGTAT
CCGCCGGGAACTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562