Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD39_RS07490 Genome accession   NZ_CP083815
Coordinates   1570293..1570919 (+) Length   208 a.a.
NCBI ID   WP_033145121.1    Uniprot ID   A0A263VSI0
Organism   Enterobacter asburiae strain 161373-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565293..1575919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD39_RS07470 (LCD39_07475) - 1565693..1567453 (-) 1761 WP_246947478.1 Lon protease family protein -
  LCD39_RS07475 (LCD39_07480) matP 1567640..1568092 (+) 453 WP_032658161.1 macrodomain Ter protein MatP -
  LCD39_RS07480 (LCD39_07485) ompA 1568156..1569211 (-) 1056 WP_023311028.1 porin OmpA -
  LCD39_RS07485 (LCD39_07490) sulA 1569566..1570075 (-) 510 WP_033145120.1 SOS-induced cell division inhibitor SulA -
  LCD39_RS07490 (LCD39_07495) sxy/tfoX 1570293..1570919 (+) 627 WP_033145121.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD39_RS07495 (LCD39_07500) yccS 1570876..1573038 (-) 2163 WP_246947479.1 YccS family putative transporter -
  LCD39_RS07500 (LCD39_07505) - 1573058..1573504 (-) 447 WP_023311032.1 YccF domain-containing protein -
  LCD39_RS07505 (LCD39_07510) helD 1573628..1575682 (+) 2055 WP_167818256.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23876.44 Da        Isoelectric Point: 9.4588

>NTDB_id=608072 LCD39_RS07490 WP_033145121.1 1570293..1570919(+) (sxy/tfoX) [Enterobacter asburiae strain 161373-yvys]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608072 LCD39_RS07490 WP_033145121.1 1570293..1570919(+) (sxy/tfoX) [Enterobacter asburiae strain 161373-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTTCGCGCCTGTG
AAGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAACGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATTACCAATGAGGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAAAAC
AAAGCGCTCGGTATTAAGGTTCTCTTCGCACTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VSI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567