Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LB453_RS19150 Genome accession   NZ_CP083809
Coordinates   3444303..3445685 (-) Length   460 a.a.
NCBI ID   WP_033749394.1    Uniprot ID   A0A2J9E5E8
Organism   Pantoea agglomerans strain 33.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3439303..3450685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB453_RS19135 (LB453_19075) deoR 3440236..3441006 (+) 771 WP_103793884.1 DNA-binding transcriptional repressor DeoR -
  LB453_RS19140 (LB453_19080) ettA 3441140..3442807 (+) 1668 WP_103793883.1 energy-dependent translational throttle protein EttA -
  LB453_RS19145 (LB453_19085) nadR 3443020..3444252 (-) 1233 WP_103793882.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LB453_RS19150 (LB453_19090) radA 3444303..3445685 (-) 1383 WP_033749394.1 DNA repair protein RadA Machinery gene
  LB453_RS19155 (LB453_19095) serB 3445696..3446673 (-) 978 WP_103793881.1 phosphoserine phosphatase -
  LB453_RS19160 (LB453_19100) - 3446781..3447440 (+) 660 WP_103793880.1 YtjB family periplasmic protein -
  LB453_RS19165 (LB453_19105) yjjG 3447535..3448215 (-) 681 WP_103793879.1 pyrimidine 5'-nucleotidase -
  LB453_RS19170 (LB453_19110) rimI 3448233..3448673 (-) 441 WP_033749390.1 ribosomal protein S18-alanine N-acetyltransferase -
  LB453_RS19175 (LB453_19115) - 3448645..3449055 (-) 411 WP_103793878.1 DNA polymerase III subunit psi -
  LB453_RS19180 (LB453_19120) rsmC 3449163..3450194 (+) 1032 WP_103793877.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49333.91 Da        Isoelectric Point: 7.4215

>NTDB_id=608061 LB453_RS19150 WP_033749394.1 3444303..3445685(-) (radA) [Pantoea agglomerans strain 33.1]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGVSRVQKLSEISLEALPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQEMKTLYVTGEESLQQVAMRAHRLGLPSENLNMLSETSIE
QICQIAEQEEPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKAVDGMKVYSAKKLADALAILDEL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=608061 LB453_RS19150 WP_033749394.1 3444303..3445685(-) (radA) [Pantoea agglomerans strain 33.1]
TTGGCCAAAGCGGCAAAACGCGCCTTCGTTTGTAACGAATGCGGCGCAGATTATCCCCGCTGGCAGGGGCAATGCAGCGC
CTGCCACGCCTGGAACACCATCACCGAAGTGCGTATTGCGGCGTCGCCGGCGGCGGCGCGCAATGAGCGCCTGAGCGGCT
ACGCCGGCAGCGCAGGCGTCAGCCGGGTGCAGAAGCTGTCGGAAATCAGCCTGGAGGCGCTGCCGCGCTTCTCGACCGGC
TTTAAAGAGTTTGACCGCGTGCTGGGCGGCGGCGTGGTGCCGGGCAGCGCCATCCTGATTGGCGGTAACCCCGGCGCGGG
GAAATCGACGCTGCTGCTGCAGGTGATGTGCCGCCTGGCGCAGGAGATGAAAACCCTCTACGTCACCGGCGAAGAGTCGC
TGCAGCAGGTAGCGATGCGCGCGCACCGCCTCGGCCTGCCGAGCGAAAACCTCAATATGCTGTCGGAAACCAGCATCGAG
CAGATCTGCCAGATCGCCGAGCAGGAAGAGCCGAAGCTGATGGTGATCGATTCCATCCAGGTGATGCACATGGCGGATAT
TCAGTCGTCTCCTGGCAGCGTGGCGCAGGTGCGCGAAACCGCCGCCTATCTGACGCGCTTCGCGAAAACGCGCGGCGTGG
CGATCGTGATGGTCGGCCACGTCACTAAAGATGGCTCGCTGGCGGGCCCAAAAGTGCTGGAGCACTGTATCGACTGTTCA
GTGCTGCTGGACGGCGACGCCGACTCGCGCTTCCGCACGCTGCGCAGCCATAAAAACCGCTTCGGCGCAGTTAACGAACT
GGGCGTGTTCGCCATGACCGAGCAGGGGATGCGCGAAGTCAGCAACCCGTCGGCGATCTTCCTGTCGCGCGGCGACGAGG
TGACCTCCGGCAGCTCCGTTATGGTGGTGTGGGAAGGCACGCGTCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGATCAC
TCAATGATGGGCAACCCGCGCCGCGTTGCGGTGGGGCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCGGTGCTGCATCG
TCATGGCGGCCTGCAGATGGCCGATCAGGATGTCTTCGTCAACGTGGTGGGCGGCGTCAAGGTCACCGAGACCAGCGCCG
ATCTGGCGCTGCTGCTGGCGATGGTCTCAAGCCTGCGCGATCGTCCGCTGCCGCAGGACCTGGTGATCTTCGGCGAGGTA
GGGCTGGCGGGGGAGATCCGCCCGGTGCCGAGCGGGCAGGAGCGTATCTCCGAAGCGGCCAAGCACGGCTTCAAACGCGC
TATCGTGCCGGCCGGCAACGCGCCGAAGAAAGCGGTCGACGGCATGAAGGTTTACAGCGCGAAGAAACTGGCGGACGCGC
TGGCGATACTGGATGAGCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

AAA domain (AAA_25)

(89-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9E5E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.276

100

0.487
  radA Streptococcus mitis NCTC 12261

43.736

98.913

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424