Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD35_RS08925 Genome accession   NZ_CP100973
Coordinates   1866392..1867819 (-) Length   475 a.a.
NCBI ID   WP_000980594.1    Uniprot ID   -
Organism   Escherichia coli strain ET300     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1861392..1872819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD35_RS08895 (NMD35_08845) yeeZ 1861447..1862271 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD35_RS08900 (NMD35_08850) yeeY 1862317..1863246 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  NMD35_RS08905 (NMD35_08855) yoeI 1863461..1863523 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD35_RS08910 (NMD35_08860) plaP 1863513..1864871 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD35_RS08915 (NMD35_08865) tsuA 1865050..1866108 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD35_RS08920 (NMD35_08870) tsuB 1866122..1866349 (+) 228 WP_000985270.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD35_RS08925 (NMD35_08875) sbcB 1866392..1867819 (-) 1428 WP_000980594.1 exodeoxyribonuclease I Machinery gene
  NMD35_RS08930 (NMD35_08880) dacD 1868028..1869194 (+) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD35_RS08935 (NMD35_08885) sbmC 1869313..1869786 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  NMD35_RS08940 (NMD35_08890) yeeA 1869984..1871042 (+) 1059 WP_001200890.1 FUSC family protein -
  NMD35_RS08945 (NMD35_08895) tmaR 1871214..1871543 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD35_RS08950 (NMD35_08900) - 1871644..1871826 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NMD35_RS08955 (NMD35_08905) - 1871889..1872026 (+) 138 Protein_1751 transposase domain-containing protein -
  NMD35_RS08960 (NMD35_08910) - 1872315..1872407 (-) 93 Protein_1752 DUF957 domain-containing protein -
  NMD35_RS08965 (NMD35_08915) yeeW 1872457..1872636 (-) 180 Protein_1753 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=608020 NMD35_RS08925 WP_000980594.1 1866392..1867819(-) (sbcB) [Escherichia coli strain ET300]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=608020 NMD35_RS08925 WP_000980594.1 1866392..1867819(-) (sbcB) [Escherichia coli strain ET300]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGTTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583