Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LB317_RS04600 Genome accession   NZ_CP083805
Coordinates   979326..980312 (+) Length   328 a.a.
NCBI ID   WP_031787337.1    Uniprot ID   A0A7U7PY59
Organism   Staphylococcus argenteus strain 1801221     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 974326..985312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB317_RS04580 (LB317_04585) - 974723..976345 (+) 1623 WP_031787333.1 peptide ABC transporter substrate-binding protein -
  LB317_RS04585 (LB317_04590) trpS 976422..977411 (-) 990 WP_031787334.1 tryptophan--tRNA ligase -
  LB317_RS04590 (LB317_04595) spxA 977705..978100 (+) 396 WP_031787335.1 transcriptional regulator SpxA -
  LB317_RS04595 (LB317_04600) mecA 978472..979191 (+) 720 WP_031787336.1 adaptor protein MecA -
  LB317_RS04600 (LB317_04605) coiA 979326..980312 (+) 987 WP_031787337.1 competence protein CoiA Machinery gene
  LB317_RS04605 (LB317_04610) pepF 980360..982168 (+) 1809 WP_031787338.1 oligoendopeptidase F -
  LB317_RS04610 (LB317_04615) yjbH 982739..983545 (-) 807 WP_031787339.1 protease adaptor protein YjbH -
  LB317_RS04615 (LB317_04620) - 983568..983933 (-) 366 WP_031787340.1 truncated hemoglobin YjbI -
  LB317_RS04620 (LB317_04625) - 984055..984648 (-) 594 WP_031787341.1 CYTH domain-containing protein -
  LB317_RS04625 (LB317_04630) - 984832..985179 (+) 348 WP_001242105.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38727.32 Da        Isoelectric Point: 9.8203

>NTDB_id=608016 LB317_RS04600 WP_031787337.1 979326..980312(+) (coiA) [Staphylococcus argenteus strain 1801221]
MLIALNKERQRVSATSAERALQYFCPACGNPVILKRGHKVVSHFAHKHLTEQKCFNNETIKHYKSKLTLAQMLMQQGYQV
EIEPFLKEIRQIPDLIINNKYAFELQLSPIPYRQVLQRTEGLNKLGYKVVWLLDDIQIFQSKVKLSHFQSIFINPITRRF
YTFNLEKQQIFEFKQLQSLGGNNFLATKMEAHIKELFIEIPHNVKSIIKLSKSSIIQYIKYCRWQNSVLQPTLSAMYQLR
LTDEAVVINYGYIFPEQIYIENHPIEWQLHVDLMLNSKDNLTIYDFLDYFKIRNFLIPLESKLVIVKKLINNYLNLNSKR
GNDVQILL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=608016 LB317_RS04600 WP_031787337.1 979326..980312(+) (coiA) [Staphylococcus argenteus strain 1801221]
ATGTTAATAGCTTTAAATAAAGAAAGACAACGAGTGTCAGCAACATCTGCTGAAAGAGCGTTGCAATATTTTTGTCCAGC
ATGTGGAAATCCGGTTATTTTAAAAAGGGGACATAAAGTAGTAAGTCATTTTGCACATAAGCATTTAACAGAACAAAAAT
GTTTTAATAATGAGACGATTAAACATTACAAAAGCAAATTAACATTAGCACAAATGTTAATGCAGCAAGGTTATCAAGTT
GAAATAGAGCCATTTTTAAAAGAAATTAGACAGATTCCTGATTTAATAATTAACAATAAATATGCATTTGAACTACAATT
ATCACCTATACCGTATAGACAAGTTTTACAACGTACAGAAGGTTTGAATAAATTAGGTTATAAAGTTGTTTGGTTGCTTG
ATGATATACAAATATTTCAAAGTAAGGTGAAATTAAGTCATTTTCAAAGTATTTTTATCAATCCAATTACACGAAGATTC
TATACATTTAATTTAGAGAAACAACAGATTTTTGAATTTAAACAATTACAAAGTTTAGGTGGCAACAATTTTTTGGCGAC
TAAAATGGAAGCACATATTAAAGAATTATTTATTGAGATACCACACAATGTTAAATCAATTATTAAATTATCTAAATCCT
CTATTATTCAATATATCAAATATTGTCGCTGGCAAAACTCGGTTTTACAACCAACATTAAGTGCTATGTATCAATTACGG
TTAACAGATGAAGCAGTAGTGATTAATTATGGCTATATTTTCCCAGAACAAATATATATCGAAAATCATCCGATAGAATG
GCAATTACACGTTGATTTAATGTTAAATAGTAAGGATAATCTCACTATTTATGATTTTTTAGATTACTTCAAAATAAGGA
ATTTTTTAATACCATTAGAATCAAAGTTAGTAATTGTGAAAAAACTTATTAACAATTATTTAAATCTTAATTCAAAAAGA
GGTAATGACGTGCAAATTTTGTTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PY59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

68.293

100

0.683
  coiA Staphylococcus aureus MW2

67.988

100

0.68