Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NMD37_RS23635 Genome accession   NZ_CP100966
Coordinates   4981000..4981992 (-) Length   330 a.a.
NCBI ID   WP_103488285.1    Uniprot ID   -
Organism   Escherichia coli strain ET350     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4976000..4986992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD37_RS23625 (NMD37_23505) yieP 4978892..4979584 (+) 693 WP_001131179.1 FadR/GntR family transcriptional regulator -
  NMD37_RS23630 (NMD37_23510) mdtD 4979607..4981034 (+) 1428 WP_001280853.1 multidrug transporter subunit MdtD -
  NMD37_RS23635 (NMD37_23515) cytR 4981000..4981992 (-) 993 WP_103488285.1 ribose operon transcriptional repressor RbsR Regulator
  NMD37_RS23640 (NMD37_23520) rbsK 4981996..4982925 (-) 930 WP_021557358.1 ribokinase -
  NMD37_RS23645 (NMD37_23525) rbsB 4983051..4983941 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NMD37_RS23650 (NMD37_23530) rbsC 4983966..4984931 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  NMD37_RS23655 (NMD37_23535) rbsA 4984936..4986441 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  NMD37_RS23660 (NMD37_23540) rbsD 4986449..4986868 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36558.86 Da        Isoelectric Point: 5.0625

>NTDB_id=607984 NMD37_RS23635 WP_103488285.1 4981000..4981992(-) (cytR) [Escherichia coli strain ET350]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLCPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=607984 NMD37_RS23635 WP_103488285.1 4981000..4981992(-) (cytR) [Escherichia coli strain ET350]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGTGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364