Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NMD37_RS20825 Genome accession   NZ_CP100966
Coordinates   4382786..4384777 (-) Length   663 a.a.
NCBI ID   WP_112847256.1    Uniprot ID   -
Organism   Escherichia coli strain ET350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4377786..4389777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD37_RS20810 (NMD37_20705) - 4378411..4378554 (-) 144 Protein_4077 integrase -
  NMD37_RS20815 (NMD37_20710) - 4378620..4379776 (+) 1157 WP_223374592.1 IS3-like element IS600 family transposase -
  NMD37_RS20820 (NMD37_20715) - 4380068..4382293 (-) 2226 WP_370598484.1 sigma-54-dependent transcriptional regulator -
  NMD37_RS20825 (NMD37_20720) recP/tkt 4382786..4384777 (-) 1992 WP_112847256.1 transketolase Machinery gene
  NMD37_RS20830 (NMD37_20725) pfkA 4384826..4385788 (-) 963 WP_223374597.1 6-phosphofructokinase -
  NMD37_RS20835 (NMD37_20730) - 4385979..4387070 (-) 1092 WP_112847252.1 glycerol dehydrogenase -
  NMD37_RS20840 (NMD37_20735) - 4387089..4389515 (-) 2427 WP_370598485.1 sigma-54-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 72197.64 Da        Isoelectric Point: 5.7753

>NTDB_id=607967 NMD37_RS20825 WP_112847256.1 4382786..4384777(-) (recP/tkt) [Escherichia coli strain ET350]
MKDRKTLANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLSGY
DLPIEELKNFRQLHSRTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHFTYAFMGDGCMME
GISHEACSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAKRFEAYGWHVVRGVDGHDADAIRAAIDVAKSITTMPTL
IICKTVIGYGSPNKAGTHDVHGAPLGDSEITAAREHLGWDHPAFEIPSDIYAQWDAKEAGKAKEAAWNEKFAAYAKAFPQ
EAAEFTRRMKGDMPSDFDAKANAFIAELQSNPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKPINEDT
AGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA
SLRLTPNMSTWRPCDQVESAVAWKYGVERHDGPTALILSRQNLVQQERTPEQLANIARGGYILKDSCRDPEVIIIATGSE
VELAVKAWEKLTTEGVRARVVSLPSTDTFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGVIVGMTTFGESAP
AEQLFEVFGITADRVFNAAVSLL

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=607967 NMD37_RS20825 WP_112847256.1 4382786..4384777(-) (recP/tkt) [Escherichia coli strain ET350]
ATGAAAGACAGAAAAACGCTGGCAAATGCAATCAGGTTTCTGAGCATGGATGCCGTACAAAAAGCCAAATCCGGTCACCC
GGGTGCTCCTATGGGTATGGCTGACATTGCCGAAGTCCTGTGGCGTGATTTCCTGAATCATAACCCGCAGAACCCATCCT
GGGCTGACCGCGACCGCTTCGTACTCTCCAACGGTCATGGCTCCATGCTCATCTACAGCCTGCTGCACCTCAGCGGTTAC
GATCTGCCGATCGAAGAGCTGAAAAACTTCCGTCAGCTGCACTCCAGAACCCCGGGCCACCCGGAAGTCGGCTACACCGC
TGGAGTGGAAACTACCACCGGCCCGCTGGGCCAGGGGATTGCCAACGCCGTCGGCATGGCGATTGCCGAGAAAACTCTTG
CGGCGCAGTTCAACCGTCCGGGCCACGATATCGTTGACCACTTCACTTACGCCTTCATGGGCGACGGCTGCATGATGGAA
GGGATTTCCCACGAAGCCTGCTCGCTGGCCGGCACACTGAAGCTGGGCAAACTAATCGCGTTCTATGATGATAATGGCAT
CTCCATTGATGGTCACGTTGAAGGCTGGTTTACCGACGACACCGCGAAGCGTTTTGAAGCCTATGGCTGGCATGTGGTAC
GCGGCGTTGACGGTCACGACGCGGATGCCATTCGTGCGGCCATTGATGTGGCAAAATCGATCACGACCATGCCAACACTT
ATCATCTGTAAAACCGTTATTGGCTACGGTTCTCCTAATAAAGCAGGAACCCACGATGTCCACGGAGCTCCTCTCGGGGA
TAGTGAAATCACAGCTGCGCGTGAACACCTTGGATGGGATCATCCGGCCTTCGAAATTCCGTCTGACATTTATGCTCAGT
GGGATGCAAAAGAAGCCGGTAAAGCAAAAGAAGCGGCCTGGAATGAGAAGTTTGCTGCTTATGCTAAAGCGTTCCCGCAG
GAAGCTGCTGAATTTACCCGTCGCATGAAAGGTGACATGCCGTCTGACTTCGACGCCAAAGCAAACGCATTCATCGCTGA
GCTACAGTCGAACCCGGCAAAAATCGCCAGCCGTAAAGCTTCGCAGAACGCTATCGAAGCCTTTGGGCCACTTCTGCCGG
AGTTCCTTGGTGGTTCAGCCGACCTGGCACCGTCCAACCTGACCCTATGGTCTGGTTCTAAGCCAATCAACGAAGACACC
GCCGGTAACTATATTCATTATGGCGTGCGTGAATTCGGGATGACTGCGATCGCTAACGGTATATCTTTGCACGGCGGCTT
CCTGCCGTACACTTCAACCTTCCTGATGTTCGTGGAATATGCCCGTAACGCTGTTCGCATGGCGGCACTGATGAAACAAC
GTCAGGTTATGGTCTACACCCACGACTCCATCGGACTGGGGGAAGATGGTCCGACACATCAGCCGGTTGAACAGGTAGCA
TCACTGCGTCTGACCCCGAACATGAGTACCTGGCGACCGTGCGACCAGGTGGAATCAGCGGTGGCATGGAAATATGGGGT
TGAGCGTCATGATGGTCCGACCGCGCTGATCCTGTCCCGCCAGAACCTGGTACAGCAGGAACGCACTCCGGAGCAGCTGG
CAAACATCGCCCGTGGCGGTTATATCCTGAAAGACAGCTGCCGGGATCCGGAAGTCATTATCATTGCCACGGGTTCTGAA
GTCGAGCTTGCCGTTAAAGCCTGGGAAAAACTCACTACGGAAGGTGTGCGGGCTCGGGTAGTATCCCTGCCATCAACGGA
TACCTTTGATAAACAGGATGCCGCTTACCGTGAATCCGTGTTACCGAAGGCAGTTACAGCCCGCGTGGCGGTGGAAGCCG
GCATTGCCGACTACTGGTATAAATATGTAGGTCTGAACGGGGTAATTGTCGGAATGACAACATTTGGGGAATCGGCACCT
GCAGAACAGCTGTTTGAAGTATTTGGTATTACTGCAGACCGCGTTTTTAATGCGGCTGTTTCGCTTCTTTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-334)

Transketolase, C-terminal domain (Transketolase_C)

(547-655)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.856

100

0.472