Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD37_RS09680 Genome accession   NZ_CP100966
Coordinates   2029105..2030532 (-) Length   475 a.a.
NCBI ID   WP_223374820.1    Uniprot ID   -
Organism   Escherichia coli strain ET350     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2024105..2035532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD37_RS09650 (NMD37_09610) yeeZ 2024160..2024984 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD37_RS09655 (NMD37_09615) yeeY 2025030..2025959 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  NMD37_RS09660 (NMD37_09620) yoeI 2026174..2026236 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD37_RS09665 (NMD37_09625) plaP 2026226..2027584 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD37_RS09670 (NMD37_09630) tsuA 2027763..2028821 (+) 1059 WP_000492306.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD37_RS09675 (NMD37_09635) tsuB 2028835..2029062 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD37_RS09680 (NMD37_09640) sbcB 2029105..2030532 (-) 1428 WP_223374820.1 exodeoxyribonuclease I Machinery gene
  NMD37_RS09685 (NMD37_09645) dacD 2030741..2031907 (+) 1167 WP_223374812.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD37_RS09690 (NMD37_09650) sbmC 2032026..2032499 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  NMD37_RS09695 (NMD37_09655) yeeA 2032697..2033755 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD37_RS09700 (NMD37_09660) tmaR 2033927..2034256 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD37_RS09705 (NMD37_09665) - 2034357..2034533 (-) 177 Protein_1901 EutP/PduV family microcompartment system protein -
  NMD37_RS09710 (NMD37_09670) cobU 2034715..2035260 (+) 546 WP_089564377.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54520.85 Da        Isoelectric Point: 5.6086

>NTDB_id=607938 NMD37_RS09680 WP_223374820.1 2029105..2030532(-) (sbcB) [Escherichia coli strain ET350]
MMNNGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSYAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=607938 NMD37_RS09680 WP_223374820.1 2029105..2030532(-) (sbcB) [Escherichia coli strain ET350]
ATGATGAATAACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCTACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCTGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-192)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579