Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NMD37_RS01505 Genome accession   NZ_CP100966
Coordinates   326316..327812 (+) Length   498 a.a.
NCBI ID   WP_042002812.1    Uniprot ID   -
Organism   Escherichia coli strain ET350     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321316..332812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD37_RS01475 (NMD37_01460) tusA 321563..321808 (+) 246 WP_000130621.1 sulfurtransferase TusA -
  NMD37_RS01480 (NMD37_01465) zntA 321910..324108 (-) 2199 WP_028132010.1 Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA -
  NMD37_RS01485 (NMD37_01470) yhhN 324182..324808 (-) 627 WP_000964718.1 lysoplasmalogenase -
  NMD37_RS01490 (NMD37_01475) yhhM 324949..325308 (+) 360 WP_000042900.1 DUF2500 domain-containing protein -
  NMD37_RS01495 (NMD37_01480) yhhL 325311..325580 (-) 270 WP_001295207.1 DUF1145 family protein -
  NMD37_RS01500 (NMD37_01485) rsmD 325570..326166 (-) 597 WP_062883527.1 16S rRNA (guanine(966)-N(2))-methyltransferase -
  NMD37_RS01505 (NMD37_01490) pilA 326316..327812 (+) 1497 WP_042002812.1 signal recognition particle-docking protein FtsY Machinery gene
  NMD37_RS01510 (NMD37_01495) ftsE 327815..328483 (+) 669 WP_000617723.1 cell division ATP-binding protein FtsE -
  NMD37_RS01515 (NMD37_01500) ftsX 328476..329534 (+) 1059 WP_001042003.1 permease-like cell division protein FtsX -
  NMD37_RS01520 (NMD37_01505) rpoH 329779..330633 (+) 855 WP_000130217.1 RNA polymerase sigma factor RpoH -
  NMD37_RS01525 (NMD37_01510) livJ 330904..332007 (+) 1104 WP_137481798.1 branched chain amino acid ABC transporter substrate-binding protein LivJ -
  NMD37_RS01530 (NMD37_01515) panM 332207..332590 (-) 384 WP_000778769.1 aspartate 1-decarboxylase autocleavage activator PanM -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54671.46 Da        Isoelectric Point: 4.1468

>NTDB_id=607906 NMD37_RS01505 WP_042002812.1 326316..327812(+) (pilA) [Escherichia coli strain ET350]
MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPAKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAE
SEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
AAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIAD
VGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQ
QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK
IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIED
LRPFKADDFIEALFARED

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=607906 NMD37_RS01505 WP_042002812.1 326316..327812(+) (pilA) [Escherichia coli strain ET350]
ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGGCTTTGGTCAAAAAGAGCAGACCCCGGAAAAAGAGACAGA
AGTTCAGAATGAACAACCGGTTGTAGAAGAAATCGTTCAGGCGCAAGAGCCTGCGAAGGCTTCGGAACAAGCCGTTGAAG
AGCAGCCGCAGGCGCATACTGAAGCCGAGGCGGAAACTTTTGCTGCCGACGTTGTGGAAGTCACTGAACAGGTAGCTGAA
AGTGAAAAAGCGCAGCCTGAAGCGGAAGTCGTTGCACAGCCGGAACCGGTCGTAGAAGAAACGCCGGAGCCAGTGGCTAT
CGAGCGTGAAGAACTGCCGTTGCCGGAAGACGTCAACGCCGAAGAGGTTTCGCCAGAAGAGTGGCAGGCTGAAGCGGAAA
CCGTAGAGATTGTCGAAGCGGCGGAAGAAGAAGCGGCTAAAGAAGAAATCACCGACGAAGAGCTGGAAGCACAGGCGCTG
GCAGCCGAAGCGGCAGAAGAGGCGGTGATGGTGGTTCCTCCGGCAGAAGAAGAGCAGCCGGTGGAAGAAATCGCTCAGGA
GCAGGAAAAACCAACCAAAGAAGGTTTTTTCGCGCGCCTGAAACGCAGCCTGTTAAAAACCAAAGAAAATCTCGGTTCCG
GATTTATCAGCCTGTTCCGCGGTAAAAAAATCGACGATGATCTGTTTGAAGAGCTGGAAGAACAGCTGTTGATCGCCGAT
GTGGGTGTGGAAACCACACGTAAAATTATCACCAATCTGACAGAAGGCGCATCCCGCAAGCAGCTTCGTGATGCCGAGGC
GCTCTATGGCCTGCTGAAAGAAGAGATGGGCGAGATTCTGGCGAAAGTCGATGAGCCGCTGAATGTTGAAGGTAAAACGC
CATTCGTGATCCTGATGGTGGGCGTCAACGGTGTGGGTAAAACCACGACGATTGGTAAGCTGGCGCGTCAGTTTGAGCAG
CAGGGTAAATCGGTGATGCTGGCGGCGGGCGATACTTTCCGTGCAGCAGCGGTTGAACAGCTTCAGGTCTGGGGTCAGCG
CAACAATATTCCGGTGATTGCCCAGCATACCGGTGCGGATTCCGCCTCTGTTATCTTCGATGCCATTCAGGCAGCTAAAG
CGCGTAATATTGACGTCCTGATTGCCGATACCGCCGGACGTCTGCAGAACAAATCGCATCTGATGGAAGAGTTGAAGAAA
ATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATCGATGCCAGCACCGGGCAGAA
CGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACGCTAACGAAACTGGACGGCACGGCGA
AAGGCGGGGTAATTTTCTCGGTGGCTGACCAGTTTGGTATCCCTATCCGCTATATTGGTGTCGGCGAACGTATTGAGGAT
TTGCGTCCGTTTAAGGCGGACGACTTTATAGAGGCACTTTTTGCCCGAGAGGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(294-494)

SRP54-type protein, helical bundle domain (SRP54_N)

(211-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.831

77.309

0.378