Detailed information NTG0607891

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD38_RS22350
• Genome accession: NZ_CP100962
• Coordinates: 4566617..4567642 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET358
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4561617..4572642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD38_RS22330 (NMD38_22175)	metJ	4562679..4562996 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD38_RS22335 (NMD38_22180)	yiiX	4563180..4563788 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD38_RS22340 (NMD38_22185)	rpmE	4563848..4564060 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD38_RS22345 (NMD38_22190)	priA	4564263..4566461 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
NMD38_RS22350 (NMD38_22195)	cytR	4566617..4567642 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD38_RS22355 (NMD38_22200)	ftsN	4567734..4568693 (+)	960	WP_000068828.1	cell division protein FtsN	-
NMD38_RS22360 (NMD38_22205)	hslV	4568786..4569316 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD38_RS22365 (NMD38_22210)	hslU	4569326..4570657 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD38_RS22370 (NMD38_22215)	menA	4570724..4571650 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD38_RS22375 (NMD38_22220)	rraA	4571743..4572228 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD38_RS22380 (NMD38_22225)	zapB	4572313..4572558 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=607891 NMD38_RS22350 WP_000644904.1 4566617..4567642(+) (cytR) [Escherichia coli strain ET358]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=607891 NMD38_RS22350 WP_000644904.1 4566617..4567642(+) (cytR) [Escherichia coli strain ET358]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628