Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LB480_RS16500 Genome accession   NZ_CP083768
Coordinates   3316523..3317119 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KSB1_9E isolate KSB1_9E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3311523..3322119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB480_RS16485 (LB480_16485) helD 3311731..3313785 (-) 2055 WP_040236859.1 DNA helicase IV -
  LB480_RS16490 (LB480_16490) - 3313910..3314356 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LB480_RS16495 (LB480_16495) yccS 3314374..3316509 (+) 2136 WP_002898422.1 YccS family putative transporter -
  LB480_RS16500 (LB480_16500) sxy/tfoX 3316523..3317119 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LB480_RS27515 - 3317297..3317425 (+) 129 WP_254895261.1 hypothetical protein -
  LB480_RS16505 (LB480_16505) sulA 3317468..3317977 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LB480_RS16510 (LB480_16510) ompA 3318330..3319400 (+) 1071 WP_002898408.1 porin OmpA -
  LB480_RS16515 (LB480_16515) matP 3319533..3319985 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LB480_RS16520 (LB480_16520) - 3320171..3321928 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=607880 LB480_RS16500 WP_004179217.1 3316523..3317119(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_9E isolate KSB1_9E]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=607880 LB480_RS16500 WP_004179217.1 3316523..3317119(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_9E isolate KSB1_9E]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51