Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LAZ98_RS11755 Genome accession   NZ_CP083764
Coordinates   2326367..2326975 (+) Length   202 a.a.
NCBI ID   WP_115940742.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMB07     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2321367..2331975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ98_RS11715 (LAZ98_11715) - 2322354..2322860 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  LAZ98_RS11720 (LAZ98_11720) - 2322999..2323412 (+) 414 WP_224443270.1 Hsp20/alpha crystallin family protein -
  LAZ98_RS11725 (LAZ98_11725) - 2323442..2323942 (-) 501 WP_224443271.1 YppG family protein -
  LAZ98_RS11730 (LAZ98_11730) - 2324129..2324311 (+) 183 WP_003153532.1 YppF family protein -
  LAZ98_RS11735 (LAZ98_11735) - 2324350..2324718 (-) 369 WP_003153529.1 YppE family protein -
  LAZ98_RS11740 (LAZ98_11740) - 2324764..2325009 (-) 246 WP_014418233.1 DUF5446 family protein -
  LAZ98_RS11745 (LAZ98_11745) sspM 2325215..2325319 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LAZ98_RS11750 (LAZ98_11750) - 2325363..2326325 (-) 963 WP_224443272.1 DUF2515 domain-containing protein -
  LAZ98_RS11755 (LAZ98_11755) recU 2326367..2326975 (+) 609 WP_115940742.1 Holliday junction resolvase RecU Machinery gene
  LAZ98_RS11760 (LAZ98_11760) - 2327029..2329812 (+) 2784 WP_224443273.1 PBP1A family penicillin-binding protein -
  LAZ98_RS11765 (LAZ98_11765) - 2329890..2330381 (-) 492 WP_065180548.1 YpoC family protein -
  LAZ98_RS11770 (LAZ98_11770) nth 2330378..2331037 (-) 660 WP_007612187.1 endonuclease III -
  LAZ98_RS11775 (LAZ98_11775) dnaD 2331056..2331754 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.78 Da        Isoelectric Point: 9.5778

>NTDB_id=607826 LAZ98_RS11755 WP_115940742.1 2326367..2326975(+) (recU) [Bacillus velezensis strain DMB07]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=607826 LAZ98_RS11755 WP_115940742.1 2326367..2326975(+) (recU) [Bacillus velezensis strain DMB07]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAGGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891