Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LAZ98_RS06015 Genome accession   NZ_CP083764
Coordinates   1155989..1157818 (+) Length   609 a.a.
NCBI ID   WP_224443722.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMB07     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1150989..1162818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ98_RS05990 (LAZ98_05990) - 1151654..1152232 (+) 579 WP_104843256.1 GNAT family N-acetyltransferase -
  LAZ98_RS05995 (LAZ98_05995) spx 1152411..1152806 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  LAZ98_RS06000 (LAZ98_06000) - 1152862..1153518 (-) 657 WP_014417421.1 TerC family protein -
  LAZ98_RS06005 (LAZ98_06005) mecA 1153794..1154450 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  LAZ98_RS06010 (LAZ98_06010) - 1154601..1155761 (+) 1161 WP_104843257.1 competence protein CoiA family protein -
  LAZ98_RS06015 (LAZ98_06015) pepF 1155989..1157818 (+) 1830 WP_224443722.1 oligoendopeptidase F Regulator
  LAZ98_RS06020 (LAZ98_06020) - 1157856..1158023 (-) 168 WP_003155026.1 hypothetical protein -
  LAZ98_RS06025 (LAZ98_06025) spxH 1158309..1159211 (-) 903 WP_003155024.1 protease adaptor protein SpxH -
  LAZ98_RS06030 (LAZ98_06030) - 1159208..1159606 (-) 399 WP_100261697.1 thiol management oxidoreductase -
  LAZ98_RS06035 (LAZ98_06035) - 1159835..1160521 (-) 687 WP_224443592.1 lytic transglycosylase domain-containing protein -
  LAZ98_RS06040 (LAZ98_06040) - 1160526..1161098 (-) 573 WP_151140231.1 CYTH domain-containing protein -
  LAZ98_RS06045 (LAZ98_06045) - 1161223..1161588 (+) 366 WP_003155020.1 hypothetical protein -
  LAZ98_RS06050 (LAZ98_06050) yjbM 1161616..1162251 (+) 636 WP_003155019.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69766.42 Da        Isoelectric Point: 5.3508

>NTDB_id=607815 LAZ98_RS06015 WP_224443722.1 1155989..1157818(+) (pepF) [Bacillus velezensis strain DMB07]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTNRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKLYSHAIEEITKQRPHVLSEQ
EEALLAEASEALSSPSNTFSVLNNADISFPSIKDENGKETQITHGNFINFLESSNREVRKNAFEAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHIYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLNELYYDLNKKYFGDNMVIDKEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTEFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEIKELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=607815 LAZ98_RS06015 WP_224443722.1 1155989..1157818(+) (pepF) [Bacillus velezensis strain DMB07]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCAGTTAAAGAATTAATCCCGAATTTATCTTCTTTTAAAGGCA
CGCTTGCTCATTCGGCTGATAATTTATACGCGGCGCTTACGGCACAGGATGAAGTGACGAACCGCCTTGGGAAACTTTAT
GCATACGCGCATATGCGCTCAGACCAGGATACGGGAAATTCTTTCTACCAAGGGCTGAACGACAAAGCCGCAAGCCTGTA
TTCCCAGGCTGCCAGCGCGACTGCTTACATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCACCAGTTCATTC
TGGAAAAAGAAGAGCTTAAGCTTTACTCCCATGCAATTGAAGAAATTACAAAACAGCGTCCGCACGTGCTGAGCGAACAA
GAAGAGGCCCTGCTTGCGGAAGCCTCAGAAGCACTGTCGTCGCCTTCCAATACATTCAGTGTTTTAAATAACGCCGATAT
TTCGTTTCCGTCGATTAAAGATGAAAACGGCAAGGAAACTCAAATCACACACGGCAACTTTATTAATTTCCTGGAAAGCA
GCAATCGTGAAGTCCGCAAAAACGCATTTGAAGCTGTATATAAAACATACGGACAGTATAAAAACACGATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGATAATTTTTACGCCCGTGTGAAAAAATATAAATCAGCACGGGAAGCGGCTTTATCCAA
TAACAGCATCCCTGAAGAAGTTTACGATAACCTGATTAAAACGATCAATAAACATCTTCCGTTATTACACCGTTACATTG
ACCTGCGGAAAAAGGTGCTCGGCCTTGATGAAGTCCATATTTATGACCTGTACACACCGCTCGTAAAAGATTCGGGAATG
AAGGTCACATATGAGGAAGCGAAAGATTATATGCTCAAAGGACTTGCTCCGCTGGGCGAGGAATACGCGTCTATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAATAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAATCCGTACATCTTGATGAACTGGCATGATAATGTCAATAATCTGTTTACGCTCGTTCACGAGTTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCGTATCCATACGGTAACTACAGCATTTTTGTCGCTGAAGTCGCTTCAAC
GACCAATGAAGCGCTGCTCGGTGAATATATGCTGAACAGCTTAAAGGATGAAAAACAGCGTCTGTACCTGCTCAACCACA
TGCTTGAAGGATTCAGAGGCACAGTGTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAG
GAAGGCGAGCCGCTGACGCCTGAACTGCTGAACGAACTTTATTATGATCTGAATAAAAAGTATTTCGGTGACAACATGGT
GATTGATAAAGAAATCAGTCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCAACAG
GCTACAGTGCGGCCCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTGGAGCGCTATACCGAATTCTTA
AAAGCGGGAAGCTCGGAATATCCGATTGACATACTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAGGC
GGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATAAAAGAACTTCTTTCGAAAGTGAACCCTTCGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

97.537

0.486