Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LAZ98_RS05525 Genome accession   NZ_CP083764
Coordinates   1061168..1061746 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain DMB07     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056168..1066746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ98_RS21480 - 1056668..1057183 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  LAZ98_RS21485 - 1057427..1058086 (-) 660 Protein_1017 protoglobin domain-containing protein -
  LAZ98_RS05510 (LAZ98_05510) - 1058083..1059606 (-) 1524 WP_110085290.1 FAD-dependent oxidoreductase -
  LAZ98_RS05515 (LAZ98_05515) - 1059731..1060588 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  LAZ98_RS05520 (LAZ98_05520) - 1060619..1060852 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  LAZ98_RS05525 (LAZ98_05525) comK 1061168..1061746 (+) 579 WP_003155179.1 competence protein ComK Regulator
  LAZ98_RS05530 (LAZ98_05530) - 1061892..1062260 (+) 369 WP_012117235.1 iron chaperone -
  LAZ98_RS05535 (LAZ98_05535) - 1062287..1062658 (+) 372 WP_224443583.1 iron chaperone -
  LAZ98_RS05540 (LAZ98_05540) - 1062781..1063290 (+) 510 WP_017417403.1 MepB family protein -
  LAZ98_RS05545 (LAZ98_05545) - 1063519..1064229 (-) 711 WP_017417404.1 YrpD family protein -
  LAZ98_RS05550 (LAZ98_05550) - 1064425..1064694 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  LAZ98_RS05555 (LAZ98_05555) - 1064727..1065044 (-) 318 WP_003155166.1 YbjQ family protein -
  LAZ98_RS05560 (LAZ98_05560) - 1065086..1066555 (-) 1470 WP_017417405.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=607807 LAZ98_RS05525 WP_003155179.1 1061168..1061746(+) (comK) [Bacillus velezensis strain DMB07]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=607807 LAZ98_RS05525 WP_003155179.1 1061168..1061746(+) (comK) [Bacillus velezensis strain DMB07]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTATGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823