Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LAZ98_RS01825 Genome accession   NZ_CP083764
Coordinates   341521..341958 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMB07     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 336521..346958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ98_RS01800 (LAZ98_01800) - 337540..338676 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  LAZ98_RS01805 (LAZ98_01805) - 338691..339125 (+) 435 WP_014416871.1 RDD family protein -
  LAZ98_RS01810 (LAZ98_01810) - 339242..339520 (+) 279 WP_263612330.1 YckD family protein -
  LAZ98_RS01815 (LAZ98_01815) - 339624..341061 (+) 1438 Protein_316 glycoside hydrolase family 1 protein -
  LAZ98_RS01820 (LAZ98_01820) nin/comJ 341102..341500 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  LAZ98_RS01825 (LAZ98_01825) nucA/comI 341521..341958 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LAZ98_RS01830 (LAZ98_01830) hxlB 342289..342846 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  LAZ98_RS01835 (LAZ98_01835) hxlA 342843..343478 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  LAZ98_RS01840 (LAZ98_01840) - 343710..344072 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=607797 LAZ98_RS01825 WP_003156588.1 341521..341958(-) (nucA/comI) [Bacillus velezensis strain DMB07]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=607797 LAZ98_RS01825 WP_003156588.1 341521..341958(-) (nucA/comI) [Bacillus velezensis strain DMB07]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641