Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LAZ97_RS18110 Genome accession   NZ_CP083763
Coordinates   3605789..3606478 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DMB06     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3600789..3611478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ97_RS18075 (LAZ97_18075) - 3601010..3601492 (-) 483 WP_129110411.1 flagellar protein FlgN -
  LAZ97_RS18080 (LAZ97_18080) flgM 3601507..3601750 (-) 244 Protein_3511 flagellar biosynthesis anti-sigma factor FlgM -
  LAZ97_RS18085 (LAZ97_18085) - 3601820..3602239 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  LAZ97_RS18090 (LAZ97_18090) comFC 3602313..3603002 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  LAZ97_RS18095 (LAZ97_18095) - 3603008..3603292 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  LAZ97_RS18100 (LAZ97_18100) comFA 3603350..3604735 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  LAZ97_RS18105 (LAZ97_18105) - 3604843..3605691 (-) 849 WP_003151387.1 DegV family protein -
  LAZ97_RS18110 (LAZ97_18110) degU 3605789..3606478 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LAZ97_RS18115 (LAZ97_18115) degS 3606555..3607718 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LAZ97_RS18120 (LAZ97_18120) - 3607941..3608588 (+) 648 WP_060657503.1 YigZ family protein -
  LAZ97_RS18125 (LAZ97_18125) - 3608593..3609786 (+) 1194 WP_128974134.1 LCP family protein -
  LAZ97_RS18130 (LAZ97_18130) - 3609886..3610962 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=607781 LAZ97_RS18110 WP_003219701.1 3605789..3606478(-) (degU) [Bacillus velezensis strain DMB06]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=607781 LAZ97_RS18110 WP_003219701.1 3605789..3606478(-) (degU) [Bacillus velezensis strain DMB06]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1