Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NMD41_RS21595 Genome accession   NZ_CP100954
Coordinates   4391750..4392775 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain ET474     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4386750..4397775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD41_RS21585 (NMD41_21430) rpmE 4388981..4389193 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  NMD41_RS21590 (NMD41_21435) priA 4389396..4391594 (+) 2199 WP_001300388.1 primosomal protein N' Machinery gene
  NMD41_RS21595 (NMD41_21440) cytR 4391750..4392775 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  NMD41_RS21600 (NMD41_21445) ftsN 4392867..4393826 (+) 960 WP_000068828.1 cell division protein FtsN -
  NMD41_RS21605 (NMD41_21450) hslV 4393919..4394449 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  NMD41_RS21610 (NMD41_21455) hslU 4394459..4395790 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  NMD41_RS21615 (NMD41_21460) menA 4395857..4396783 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  NMD41_RS21620 (NMD41_21465) rraA 4396876..4397361 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  NMD41_RS21625 (NMD41_21470) zapB 4397446..4397691 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=607729 NMD41_RS21595 WP_000644904.1 4391750..4392775(+) (cytR) [Escherichia coli strain ET474]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=607729 NMD41_RS21595 WP_000644904.1 4391750..4392775(+) (cytR) [Escherichia coli strain ET474]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628