Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD41_RS08590 Genome accession   NZ_CP100954
Coordinates   1791813..1793240 (-) Length   475 a.a.
NCBI ID   WP_370606044.1    Uniprot ID   -
Organism   Escherichia coli strain ET474     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1786813..1798240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD41_RS08560 (NMD41_08510) yeeZ 1786869..1787693 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD41_RS08565 (NMD41_08515) yeeY 1787739..1788668 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NMD41_RS08570 (NMD41_08520) yoeI 1788883..1788945 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD41_RS08575 (NMD41_08525) plaP 1788935..1790293 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD41_RS08580 (NMD41_08530) tsuA 1790472..1791529 (+) 1058 Protein_1677 thiosulfate utilization transporter TsuA/YeeE -
  NMD41_RS08585 (NMD41_08535) tsuB 1791543..1791770 (+) 228 WP_370606043.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD41_RS08590 (NMD41_08540) sbcB 1791813..1793240 (-) 1428 WP_370606044.1 exodeoxyribonuclease I Machinery gene
  NMD41_RS08595 (NMD41_08545) dacD 1793449..1794615 (+) 1167 WP_370606045.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD41_RS08600 (NMD41_08550) sbmC 1794734..1795207 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  NMD41_RS08605 (NMD41_08555) yeeA 1795405..1796463 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD41_RS08610 (NMD41_08560) tmaR 1796635..1796964 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD41_RS08615 (NMD41_08565) - 1797065..1797361 (-) 297 Protein_1684 EutP/PduV family microcompartment system protein -
  NMD41_RS08620 (NMD41_08570) - 1797340..1797696 (+) 357 WP_332831666.1 cobalamin biosynthesis protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4720

>NTDB_id=607694 NMD41_RS08590 WP_370606044.1 1791813..1793240(-) (sbcB) [Escherichia coli strain ET474]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=607694 NMD41_RS08590 WP_370606044.1 1791813..1793240(-) (sbcB) [Escherichia coli strain ET474]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCTG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581