Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   K8M08_RS21045 Genome accession   NZ_CP083749
Coordinates   4045212..4045670 (-) Length   152 a.a.
NCBI ID   WP_061401480.1    Uniprot ID   -
Organism   Bacillus sp. CRB-7     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4040212..4050670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS21020 (K8M08_21020) - 4040343..4041884 (-) 1542 WP_000445746.1 MDR family MFS transporter -
  K8M08_RS21025 (K8M08_21025) - 4042312..4042812 (+) 501 WP_000708171.1 hypothetical protein -
  K8M08_RS21030 (K8M08_21030) - 4042844..4043077 (-) 234 WP_000939451.1 SPP1 phage holin family protein -
  K8M08_RS21035 (K8M08_21035) - 4043242..4043883 (+) 642 WP_000680832.1 diguanylate cyclase domain-containing protein -
  K8M08_RS21040 (K8M08_21040) - 4044518..4045180 (+) 663 WP_000922488.1 YkyA family protein -
  K8M08_RS21045 (K8M08_21045) kre 4045212..4045670 (-) 459 WP_061401480.1 YkyB family protein Regulator
  K8M08_RS21050 (K8M08_21050) - 4045848..4047383 (+) 1536 WP_000658861.1 Ppx/GppA family phosphatase -
  K8M08_RS21055 (K8M08_21055) - 4047492..4049600 (+) 2109 WP_000423559.1 polyphosphate kinase -
  K8M08_RS21060 (K8M08_21060) - 4049774..4050010 (-) 237 WP_000283743.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17771.52 Da        Isoelectric Point: 10.6793

>NTDB_id=607671 K8M08_RS21045 WP_061401480.1 4045212..4045670(-) (kre) [Bacillus sp. CRB-7]
MKPSQPQSQLQNQHSINRLAQAVFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPIPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=607671 K8M08_RS21045 WP_061401480.1 4045212..4045670(-) (kre) [Bacillus sp. CRB-7]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAAGCTGTTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGCTTAATTACTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTCTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTACTTTTTCCATATTCCTCCTACAAAAGAAGATTTTCGAATCCTACCACATCTCGGTCATCTTGAATCCTCCTA
TCGAAACCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCGCTAAAAC
AAGAAAAAAAATTAAGTGAACCTATCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

66.379

76.316

0.507