Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K8M08_RS19520 Genome accession   NZ_CP083749
Coordinates   3777537..3778283 (+) Length   248 a.a.
NCBI ID   WP_000487004.1    Uniprot ID   A0A853XAR0
Organism   Bacillus sp. CRB-7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3772537..3783283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS19490 (K8M08_19490) - 3772826..3774970 (+) 2145 WP_000946447.1 HD family phosphohydrolase -
  K8M08_RS19495 (K8M08_19495) ybeY 3774967..3775437 (+) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  K8M08_RS19500 (K8M08_19500) - 3775434..3775787 (+) 354 WP_000715478.1 diacylglycerol kinase family protein -
  K8M08_RS19505 (K8M08_19505) - 3775887..3776285 (+) 399 WP_001086294.1 cytidine deaminase -
  K8M08_RS19510 (K8M08_19510) era 3776278..3777183 (+) 906 WP_001080242.1 GTPase Era -
  K8M08_RS19515 (K8M08_19515) - 3777360..3777503 (+) 144 WP_000883924.1 YqzL family protein -
  K8M08_RS19520 (K8M08_19520) recO 3777537..3778283 (+) 747 WP_000487004.1 DNA repair protein RecO Machinery gene
  K8M08_RS19525 (K8M08_19525) - 3778391..3779023 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  K8M08_RS19530 (K8M08_19530) - 3779053..3779865 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  K8M08_RS19535 (K8M08_19535) dnaG 3780718..3782514 (+) 1797 WP_000528216.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28677.28 Da        Isoelectric Point: 8.0540

>NTDB_id=607666 K8M08_RS19520 WP_000487004.1 3777537..3778283(+) (recO) [Bacillus sp. CRB-7]
MFQKVEGIVIRTIDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=607666 K8M08_RS19520 WP_000487004.1 3777537..3778283(+) (recO) [Bacillus sp. CRB-7]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGATAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACAAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCACGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAGTTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853XAR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552