Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K8M08_RS13655 Genome accession   NZ_CP083749
Coordinates   2657310..2658437 (-) Length   375 a.a.
NCBI ID   WP_000470750.1    Uniprot ID   A0A2C3GXQ0
Organism   Bacillus sp. CRB-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2652310..2663437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS13645 (K8M08_13645) gyrA 2652789..2655260 (-) 2472 WP_001282849.1 DNA gyrase subunit A -
  K8M08_RS13650 (K8M08_13650) gyrB 2655349..2657271 (-) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  K8M08_RS13655 (K8M08_13655) recF 2657310..2658437 (-) 1128 WP_000470750.1 DNA replication/repair protein RecF Machinery gene
  K8M08_RS13660 (K8M08_13660) yaaA 2658450..2658662 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  K8M08_RS13665 (K8M08_13665) dnaN 2658790..2659929 (-) 1140 WP_001212891.1 DNA polymerase III subunit beta -
  K8M08_RS13670 (K8M08_13670) dnaA 2660108..2661448 (-) 1341 WP_000428026.1 chromosomal replication initiator protein DnaA -
  K8M08_RS13675 (K8M08_13675) rpmH 2662014..2662148 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  K8M08_RS13680 (K8M08_13680) rnpA 2662225..2662572 (+) 348 WP_000726630.1 ribonuclease P protein component -
  K8M08_RS13685 (K8M08_13685) spoIIIJ 2662625..2663392 (+) 768 WP_000727747.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43334.66 Da        Isoelectric Point: 6.7809

>NTDB_id=607649 K8M08_RS13655 WP_000470750.1 2657310..2658437(-) (recF) [Bacillus sp. CRB-7]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=607649 K8M08_RS13655 WP_000470750.1 2657310..2658437(-) (recF) [Bacillus sp. CRB-7]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCTAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTAATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTACGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCAAAAACGCTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTGGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTAGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C3GXQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651