Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K8M08_RS13455 Genome accession   NZ_CP083749
Coordinates   2620787..2621071 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. CRB-7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2615787..2626071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS13440 (K8M08_13440) rnmV 2616577..2617134 (-) 558 WP_000692830.1 ribonuclease M5 -
  K8M08_RS13445 (K8M08_13445) - 2617352..2618119 (-) 768 WP_000895835.1 TatD family hydrolase -
  K8M08_RS13450 (K8M08_13450) metG 2618286..2620268 (-) 1983 WP_000134149.1 methionine--tRNA ligase -
  K8M08_RS13455 (K8M08_13455) abrB 2620787..2621071 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K8M08_RS13460 (K8M08_13460) rsmI 2621092..2621967 (-) 876 WP_000267807.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K8M08_RS13465 (K8M08_13465) - 2621936..2622226 (-) 291 WP_000414341.1 GIY-YIG nuclease family protein -
  K8M08_RS13470 (K8M08_13470) - 2622213..2622953 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  K8M08_RS13475 (K8M08_13475) yabA 2623074..2623424 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  K8M08_RS13480 (K8M08_13480) - 2623439..2624266 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  K8M08_RS13485 (K8M08_13485) holB 2624272..2625252 (-) 981 Protein_2611 DNA polymerase III subunit delta' -
  K8M08_RS13490 (K8M08_13490) tmk 2625288..2625914 (-) 627 WP_000677229.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=607647 K8M08_RS13455 WP_000843036.1 2620787..2621071(+) (abrB) [Bacillus sp. CRB-7]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=607647 K8M08_RS13455 WP_000843036.1 2620787..2621071(+) (abrB) [Bacillus sp. CRB-7]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851