Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMD42_RS16940 Genome accession   NZ_CP100950
Coordinates   3449225..3449830 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ET479     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3444225..3454830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD42_RS16920 (NMD42_16775) aes 3444262..3445221 (+) 960 WP_000801832.1 acetyl esterase -
  NMD42_RS16925 (NMD42_16780) hemH 3445218..3446180 (-) 963 WP_001250088.1 ferrochelatase -
  NMD42_RS16930 (NMD42_16785) adk 3446416..3447060 (-) 645 WP_001220233.1 adenylate kinase -
  NMD42_RS16935 (NMD42_16790) htpG 3447241..3449115 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NMD42_RS16940 (NMD42_16795) recR 3449225..3449830 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NMD42_RS16945 (NMD42_16800) ybaB 3449830..3450159 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NMD42_RS16950 (NMD42_16805) dnaX 3450212..3452143 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NMD42_RS16955 (NMD42_16810) apt 3452272..3452823 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NMD42_RS16960 (NMD42_16815) ybaN 3452976..3453353 (-) 378 WP_001188905.1 DUF454 family protein -
  NMD42_RS16965 (NMD42_16820) priC 3453423..3453950 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  NMD42_RS16970 (NMD42_16825) rsmS 3453964..3454125 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=607632 NMD42_RS16940 WP_001195025.1 3449225..3449830(-) (recR) [Escherichia coli strain ET479]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=607632 NMD42_RS16940 WP_001195025.1 3449225..3449830(-) (recR) [Escherichia coli strain ET479]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443