Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K8M08_RS06065 Genome accession   NZ_CP083749
Coordinates   1198422..1199024 (+) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus sp. CRB-7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1193422..1204024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS06020 (K8M08_06020) gpsB 1193650..1193988 (-) 339 WP_000622430.1 cell division regulator GpsB -
  K8M08_RS06025 (K8M08_06025) - 1194086..1194640 (-) 555 WP_000862921.1 DUF1273 domain-containing protein -
  K8M08_RS06030 (K8M08_06030) - 1194698..1195123 (-) 426 WP_000546265.1 CotD family spore coat protein -
  K8M08_RS06035 (K8M08_06035) - 1195278..1195778 (-) 501 WP_000487702.1 YppG family protein -
  K8M08_RS06040 (K8M08_06040) - 1195956..1196147 (+) 192 WP_000242660.1 YppF family protein -
  K8M08_RS06045 (K8M08_06045) - 1196172..1196516 (-) 345 WP_000872963.1 YppE family protein -
  K8M08_RS06050 (K8M08_06050) - 1196532..1196774 (-) 243 WP_001252039.1 hypothetical protein -
  K8M08_RS06055 (K8M08_06055) - 1196860..1197036 (+) 177 WP_002020884.1 hypothetical protein -
  K8M08_RS06060 (K8M08_06060) - 1197293..1198318 (-) 1026 WP_033702122.1 DUF2515 domain-containing protein -
  K8M08_RS06065 (K8M08_06065) recU 1198422..1199024 (+) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  K8M08_RS06070 (K8M08_06070) - 1199090..1201798 (+) 2709 WP_001283109.1 PBP1A family penicillin-binding protein -
  K8M08_RS06075 (K8M08_06075) - 1201822..1202340 (-) 519 WP_000442667.1 YpoC family protein -
  K8M08_RS06080 (K8M08_06080) nth 1202344..1202991 (-) 648 WP_000933017.1 endonuclease III -
  K8M08_RS06085 (K8M08_06085) dnaD 1203007..1203714 (-) 708 WP_000728549.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=607630 K8M08_RS06065 WP_000155593.1 1198422..1199024(+) (recU) [Bacillus sp. CRB-7]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=607630 K8M08_RS06065 WP_000155593.1 1198422..1199024(+) (recU) [Bacillus sp. CRB-7]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAGCCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625