Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K8M08_RS04115 Genome accession   NZ_CP083749
Coordinates   797369..797656 (-) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus sp. CRB-7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 792369..802656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS04095 (K8M08_04095) - 792981..793916 (-) 936 WP_000877957.1 aldo/keto reductase -
  K8M08_RS04100 (K8M08_04100) - 794023..794331 (+) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  K8M08_RS04105 (K8M08_04105) galT 794443..795933 (-) 1491 WP_000640229.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  K8M08_RS04110 (K8M08_04110) - 796145..797095 (-) 951 WP_001089042.1 serine protease -
  K8M08_RS04115 (K8M08_04115) abrB 797369..797656 (-) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K8M08_RS04120 (K8M08_04120) - 797772..799652 (-) 1881 WP_001026028.1 FtsX-like permease family protein -
  K8M08_RS04125 (K8M08_04125) nadE 799924..800742 (+) 819 WP_000174883.1 ammonia-dependent NAD(+) synthetase -
  K8M08_RS04130 (K8M08_04130) - 800788..801249 (-) 462 WP_000024988.1 NUDIX hydrolase -
  K8M08_RS04135 (K8M08_04135) - 801273..801470 (-) 198 WP_088297523.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=607629 K8M08_RS04115 WP_000648330.1 797369..797656(-) (abrB) [Bacillus sp. CRB-7]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=607629 K8M08_RS04115 WP_000648330.1 797369..797656(-) (abrB) [Bacillus sp. CRB-7]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
GATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516