Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD42_RS09370 Genome accession   NZ_CP100950
Coordinates   1900781..1902208 (-) Length   475 a.a.
NCBI ID   WP_077761204.1    Uniprot ID   -
Organism   Escherichia coli strain ET479     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1895781..1907208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD42_RS09340 (NMD42_09265) yeeZ 1895836..1896660 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  NMD42_RS09345 (NMD42_09270) yeeY 1896706..1897635 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NMD42_RS09350 (NMD42_09275) yoeI 1897850..1897912 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD42_RS09355 (NMD42_09280) plaP 1897902..1899260 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD42_RS09360 (NMD42_09285) tsuA 1899439..1900497 (+) 1059 WP_032200073.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD42_RS09365 (NMD42_09290) tsuB 1900511..1900738 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD42_RS09370 (NMD42_09295) sbcB 1900781..1902208 (-) 1428 WP_077761204.1 exodeoxyribonuclease I Machinery gene
  NMD42_RS09375 (NMD42_09300) dacD 1902417..1903583 (+) 1167 WP_032200074.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD42_RS09380 (NMD42_09305) sbmC 1903702..1904175 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  NMD42_RS09385 (NMD42_09310) yeeA 1904374..1905432 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD42_RS09390 (NMD42_09315) tmaR 1905604..1905933 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD42_RS09395 (NMD42_09320) - 1906034..1906399 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.2371

>NTDB_id=607612 NMD42_RS09370 WP_077761204.1 1900781..1902208(-) (sbcB) [Escherichia coli strain ET479]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQIKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPLNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDREKMALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=607612 NMD42_RS09370 WP_077761204.1 1900781..1902208(-) (sbcB) [Escherichia coli strain ET479]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCAAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATAAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCTTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAGAGAGAAAATGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585