Detailed information NTG0607408

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LAZ96_RS08355
• Genome accession: NZ_CP083715
• Coordinates: 1611364..1612509 (+)
• Length: 381 a.a.
• NCBI ID: WP_079978504.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain DMB05
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1606364..1617509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAZ96_RS08335 (LAZ96_08335)	fnr	1606838..1607554 (-)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-
LAZ96_RS08340 (LAZ96_08340)	narK	1607652..1608842 (-)	1191	WP_017418712.1	nitrate transporter NarK	-
LAZ96_RS08345 (LAZ96_08345)	argS	1608977..1610647 (-)	1671	WP_025649385.1	arginine--tRNA ligase	-
LAZ96_RS08350 (LAZ96_08350)	-	1610644..1611072 (-)	429	WP_014419128.1	DUF1934 domain-containing protein	-
LAZ96_RS08355 (LAZ96_08355)	rapF	1611364..1612509 (+)	1146	WP_079978504.1	Rap family tetratricopeptide repeat protein	Regulator
LAZ96_RS08360 (LAZ96_08360)	-	1612493..1612612 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
LAZ96_RS08365 (LAZ96_08365)	speB	1612735..1613607 (-)	873	WP_003151054.1	agmatinase	-
LAZ96_RS08370 (LAZ96_08370)	speE	1613667..1614497 (-)	831	WP_017418706.1	spermidine synthase	-
LAZ96_RS08375 (LAZ96_08375)	-	1614697..1616769 (+)	2073	WP_106067806.1	transglycosylase domain-containing protein	-
LAZ96_RS08380 (LAZ96_08380)	-	1616794..1617225 (-)	432	WP_017418704.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45816.31 Da
• Isoelectric Point: 5.0722

>NTDB_id=607408 LAZ96_RS08355 WP_079978504.1 1611364..1612509(+) (rapF) [Bacillus velezensis strain DMB05]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYFIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=607408 LAZ96_RS08355 WP_079978504.1 1611364..1612509(+) (rapF) [Bacillus velezensis strain DMB05]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTCATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.816	100	0.698
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535