Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   LAZ96_RS05535 Genome accession   NZ_CP083715
Coordinates   1052387..1052527 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain DMB05     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047387..1057527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ96_RS05510 (LAZ96_05510) - 1047572..1049056 (-) 1485 Protein_1075 sensor histidine kinase -
  LAZ96_RS05515 (LAZ96_05515) - 1049170..1050320 (+) 1151 WP_087614160.1 IS3 family transposase -
  LAZ96_RS05520 (LAZ96_05520) - 1050354..1051163 (-) 810 WP_224446919.1 hypothetical protein -
  LAZ96_RS05525 (LAZ96_05525) comX 1051177..1051350 (-) 174 WP_012118314.1 competence pheromone ComX -
  LAZ96_RS05530 (LAZ96_05530) - 1051319..1052179 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  LAZ96_RS05535 (LAZ96_05535) degQ 1052387..1052527 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LAZ96_RS05540 (LAZ96_05540) - 1052993..1053334 (+) 342 WP_014305721.1 hypothetical protein -
  LAZ96_RS05545 (LAZ96_05545) - 1053341..1054561 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  LAZ96_RS05550 (LAZ96_05550) - 1054691..1056157 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  LAZ96_RS05555 (LAZ96_05555) - 1056175..1056726 (-) 552 WP_017419426.1 cysteine hydrolase family protein -
  LAZ96_RS05560 (LAZ96_05560) - 1056822..1057220 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=607398 LAZ96_RS05535 WP_003152043.1 1052387..1052527(-) (degQ) [Bacillus velezensis strain DMB05]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=607398 LAZ96_RS05535 WP_003152043.1 1052387..1052527(-) (degQ) [Bacillus velezensis strain DMB05]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891