Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LAZ96_RS03565 Genome accession   NZ_CP083715
Coordinates   674927..675679 (-) Length   250 a.a.
NCBI ID   WP_017418284.1    Uniprot ID   A0AAP5QSZ3
Organism   Bacillus velezensis strain DMB05     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 669927..680679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ96_RS03540 (LAZ96_03540) mreC 670363..671226 (-) 864 WP_016938781.1 rod shape-determining protein MreC -
  LAZ96_RS03545 (LAZ96_03545) mreB 671257..672270 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  LAZ96_RS03550 (LAZ96_03550) radC 672362..673057 (-) 696 WP_007408165.1 DNA repair protein RadC -
  LAZ96_RS03555 (LAZ96_03555) - 673089..673658 (-) 570 WP_123117372.1 nucleoside triphosphate pyrophosphatase -
  LAZ96_RS03560 (LAZ96_03560) - 673799..674800 (-) 1002 WP_123117373.1 SPOR domain-containing protein -
  LAZ96_RS03565 (LAZ96_03565) comC 674927..675679 (-) 753 WP_017418284.1 A24 family peptidase Machinery gene
  LAZ96_RS03570 (LAZ96_03570) - 675820..677112 (-) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LAZ96_RS03575 (LAZ96_03575) - 677171..679813 (-) 2643 WP_012118109.1 valine--tRNA ligase -
  LAZ96_RS03580 (LAZ96_03580) - 680266..680457 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27260.00 Da        Isoelectric Point: 9.4293

>NTDB_id=607392 LAZ96_RS03565 WP_017418284.1 674927..675679(-) (comC) [Bacillus velezensis strain DMB05]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=607392 LAZ96_RS03565 WP_017418284.1 674927..675679(-) (comC) [Bacillus velezensis strain DMB05]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGTCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576