Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LAZ96_RS02715 Genome accession   NZ_CP083715
Coordinates   515156..515923 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMB05     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 510156..520923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ96_RS02695 (LAZ96_02695) - 510359..511171 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  LAZ96_RS02700 (LAZ96_02700) ccpN 511197..511835 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  LAZ96_RS02705 (LAZ96_02705) glyS 511935..513974 (-) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  LAZ96_RS02710 (LAZ96_02710) glyQ 513967..514854 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  LAZ96_RS02715 (LAZ96_02715) recO 515156..515923 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  LAZ96_RS02720 (LAZ96_02720) - 515960..516103 (-) 144 WP_007408286.1 YqzL family protein -
  LAZ96_RS02725 (LAZ96_02725) era 516259..517164 (-) 906 WP_007408285.1 GTPase Era -
  LAZ96_RS02730 (LAZ96_02730) - 517145..517555 (-) 411 WP_003152976.1 cytidine deaminase -
  LAZ96_RS02735 (LAZ96_02735) - 517679..518053 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  LAZ96_RS02740 (LAZ96_02740) ybeY 518034..518507 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  LAZ96_RS02745 (LAZ96_02745) - 518508..520640 (-) 2133 WP_025649836.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=607385 LAZ96_RS02715 WP_003152982.1 515156..515923(-) (recO) [Bacillus velezensis strain DMB05]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=607385 LAZ96_RS02715 WP_003152982.1 515156..515923(-) (recO) [Bacillus velezensis strain DMB05]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CGAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894