Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LAZ96_RS01135 Genome accession   NZ_CP083715
Coordinates   182836..183444 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMB05     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177836..188444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ96_RS01095 (LAZ96_01095) - 178856..179362 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  LAZ96_RS01100 (LAZ96_01100) - 179501..179914 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  LAZ96_RS01105 (LAZ96_01105) - 179944..180411 (-) 468 WP_017418018.1 YppG family protein -
  LAZ96_RS01110 (LAZ96_01110) - 180598..180780 (+) 183 WP_003153532.1 YppF family protein -
  LAZ96_RS01115 (LAZ96_01115) - 180819..181187 (-) 369 WP_134986528.1 YppE family protein -
  LAZ96_RS01120 (LAZ96_01120) - 181233..181478 (-) 246 WP_134986529.1 DUF5446 family protein -
  LAZ96_RS01125 (LAZ96_01125) sspM 181684..181788 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LAZ96_RS01130 (LAZ96_01130) - 181832..182794 (-) 963 WP_224446880.1 DUF2515 domain-containing protein -
  LAZ96_RS01135 (LAZ96_01135) recU 182836..183444 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  LAZ96_RS01140 (LAZ96_01140) - 183483..186260 (+) 2778 WP_017418022.1 PBP1A family penicillin-binding protein -
  LAZ96_RS01145 (LAZ96_01145) - 186339..186830 (-) 492 WP_012117839.1 YpoC family protein -
  LAZ96_RS01150 (LAZ96_01150) nth 186827..187486 (-) 660 WP_007612187.1 endonuclease III -
  LAZ96_RS01155 (LAZ96_01155) dnaD 187505..188203 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=607374 LAZ96_RS01135 WP_003153521.1 182836..183444(+) (recU) [Bacillus velezensis strain DMB05]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=607374 LAZ96_RS01135 WP_003153521.1 182836..183444(+) (recU) [Bacillus velezensis strain DMB05]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896