Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LBF07_RS04785 | Genome accession | NZ_CP083709 |
| Coordinates | 1001737..1002270 (+) | Length | 177 a.a. |
| NCBI ID | WP_224435061.1 | Uniprot ID | - |
| Organism | Enterobacter cloacae complex sp. ECL352 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 996737..1007270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LBF07_RS04735 (LBF07_04735) | - | 997130..997510 (+) | 381 | WP_032634788.1 | hypothetical protein | - |
| LBF07_RS04740 (LBF07_04740) | - | 997552..997761 (-) | 210 | WP_094934292.1 | hypothetical protein | - |
| LBF07_RS04745 (LBF07_04745) | - | 998629..998823 (+) | 195 | WP_224435065.1 | hypothetical protein | - |
| LBF07_RS04750 (LBF07_04750) | - | 998984..999244 (+) | 261 | WP_047357432.1 | hypothetical protein | - |
| LBF07_RS04755 (LBF07_04755) | - | 999241..999402 (+) | 162 | WP_206461960.1 | hypothetical protein | - |
| LBF07_RS04760 (LBF07_04760) | - | 999399..999608 (+) | 210 | WP_058676785.1 | cell division protein FtsZ | - |
| LBF07_RS04765 (LBF07_04765) | - | 999682..1000653 (+) | 972 | Protein_941 | hypothetical protein | - |
| LBF07_RS04770 (LBF07_04770) | - | 1000662..1000859 (+) | 198 | WP_224435063.1 | thioredoxin reductase | - |
| LBF07_RS04775 (LBF07_04775) | - | 1000856..1001014 (+) | 159 | WP_159427221.1 | hypothetical protein | - |
| LBF07_RS04780 (LBF07_04780) | - | 1001011..1001736 (+) | 726 | WP_224435062.1 | Rad52/Rad22 family DNA repair protein | - |
| LBF07_RS04785 (LBF07_04785) | ssb | 1001737..1002270 (+) | 534 | WP_224435061.1 | single-stranded DNA-binding protein | Machinery gene |
| LBF07_RS04790 (LBF07_04790) | - | 1002296..1002517 (+) | 222 | WP_094934657.1 | hypothetical protein | - |
| LBF07_RS04795 (LBF07_04795) | - | 1002517..1002669 (+) | 153 | WP_129719539.1 | DUF1317 family protein | - |
| LBF07_RS04800 (LBF07_04800) | - | 1002666..1003325 (+) | 660 | WP_129719535.1 | MT-A70 family methyltransferase | - |
| LBF07_RS04805 (LBF07_04805) | - | 1003322..1003540 (+) | 219 | WP_224435129.1 | hypothetical protein | - |
| LBF07_RS04810 (LBF07_04810) | - | 1003537..1003884 (+) | 348 | WP_172421305.1 | hypothetical protein | - |
| LBF07_RS04815 (LBF07_04815) | - | 1003970..1004191 (+) | 222 | WP_206461931.1 | TraR/DksA family transcriptional regulator | - |
| LBF07_RS04820 (LBF07_04820) | - | 1004191..1004430 (+) | 240 | WP_206461930.1 | DUF4222 domain-containing protein | - |
| LBF07_RS04825 (LBF07_04825) | - | 1004439..1004669 (+) | 231 | WP_094058358.1 | hypothetical protein | - |
| LBF07_RS04830 (LBF07_04830) | - | 1004805..1005008 (+) | 204 | WP_094935813.1 | AlpA family transcriptional regulator | - |
| LBF07_RS24605 | - | 1005160..1005429 (-) | 270 | WP_176686757.1 | VasL domain-containing protein | - |
| LBF07_RS04835 (LBF07_04835) | tssC | 1005432..1006698 (-) | 1267 | Protein_956 | type VI secretion system contractile sheath large subunit | - |
| LBF07_RS04840 (LBF07_04840) | tssB | 1006731..1007228 (-) | 498 | WP_094935815.1 | type VI secretion system contractile sheath small subunit | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19080.07 Da Isoelectric Point: 6.2377
>NTDB_id=607353 LBF07_RS04785 WP_224435061.1 1001737..1002270(+) (ssb) [Enterobacter cloacae complex sp. ECL352]
MASKGVNKVILVGNLGQDPEVRYLPSGGAVCSVTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGTEKYTTEVVVNVGGTMQMLGGRQGGGAPASAGQQNGNQPQHSSGQRQQQQRPQHGGEPGGWGTPQQ
AQGQQDAPMDFDDDIPF
MASKGVNKVILVGNLGQDPEVRYLPSGGAVCSVTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGTEKYTTEVVVNVGGTMQMLGGRQGGGAPASAGQQNGNQPQHSSGQRQQQQRPQHGGEPGGWGTPQQ
AQGQQDAPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=607353 LBF07_RS04785 WP_224435061.1 1001737..1002270(+) (ssb) [Enterobacter cloacae complex sp. ECL352]
ATGGCTAGCAAAGGCGTAAACAAAGTGATCCTCGTAGGCAACCTCGGGCAAGACCCCGAGGTCCGTTATCTTCCGTCCGG
CGGCGCAGTGTGTAGCGTGACGCTGGCAACTTCGGAGTCATGGCGAGATAAAGCCACCGGCGAGCTTAAAGAGCAAACGG
AATGGCACCGCGTCGTTCTGTTCGGAAAGTTGGCTGAAGTGGCCGGAGAATACCTGCGCAAAGGCTCTCAGGTCTATATC
GAGGGCCAGCTGCGCACCCGCAAATGGACAGATCAGGCAGGCACGGAGAAGTACACCACAGAGGTTGTTGTAAACGTCGG
CGGCACCATGCAAATGCTCGGTGGTCGTCAGGGTGGTGGTGCACCAGCAAGTGCTGGCCAGCAGAATGGTAACCAGCCGC
AACATAGTAGTGGACAGCGTCAGCAACAACAGCGACCGCAACATGGTGGTGAACCAGGAGGATGGGGAACCCCACAGCAA
GCGCAGGGACAGCAAGATGCCCCAATGGACTTTGACGACGACATACCCTTTTGA
ATGGCTAGCAAAGGCGTAAACAAAGTGATCCTCGTAGGCAACCTCGGGCAAGACCCCGAGGTCCGTTATCTTCCGTCCGG
CGGCGCAGTGTGTAGCGTGACGCTGGCAACTTCGGAGTCATGGCGAGATAAAGCCACCGGCGAGCTTAAAGAGCAAACGG
AATGGCACCGCGTCGTTCTGTTCGGAAAGTTGGCTGAAGTGGCCGGAGAATACCTGCGCAAAGGCTCTCAGGTCTATATC
GAGGGCCAGCTGCGCACCCGCAAATGGACAGATCAGGCAGGCACGGAGAAGTACACCACAGAGGTTGTTGTAAACGTCGG
CGGCACCATGCAAATGCTCGGTGGTCGTCAGGGTGGTGGTGCACCAGCAAGTGCTGGCCAGCAGAATGGTAACCAGCCGC
AACATAGTAGTGGACAGCGTCAGCAACAACAGCGACCGCAACATGGTGGTGAACCAGGAGGATGGGGAACCCCACAGCAA
GCGCAGGGACAGCAAGATGCCCCAATGGACTTTGACGACGACATACCCTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
66.484 |
100 |
0.684 |
| ssb | Glaesserella parasuis strain SC1401 |
50.82 |
100 |
0.525 |
| ssb | Neisseria meningitidis MC58 |
43.258 |
100 |
0.435 |
| ssb | Neisseria gonorrhoeae MS11 |
43.182 |
99.435 |
0.429 |