Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD46_RS08490 Genome accession   NZ_CP100936
Coordinates   1736074..1737501 (-) Length   475 a.a.
NCBI ID   WP_000980610.1    Uniprot ID   -
Organism   Escherichia coli strain ET650     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731074..1742501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD46_RS08460 (NMD46_08420) yeeZ 1731129..1731953 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD46_RS08465 (NMD46_08425) yeeY 1731999..1732928 (+) 930 WP_370604067.1 LysR substrate-binding domain-containing protein -
  NMD46_RS08470 (NMD46_08430) yoeI 1733143..1733205 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD46_RS08475 (NMD46_08435) plaP 1733195..1734553 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD46_RS08480 (NMD46_08440) tsuA 1734732..1735790 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD46_RS08485 (NMD46_08445) tsuB 1735804..1736031 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD46_RS08490 (NMD46_08450) sbcB 1736074..1737501 (-) 1428 WP_000980610.1 exodeoxyribonuclease I Machinery gene
  NMD46_RS08495 (NMD46_08455) dacD 1737710..1738876 (+) 1167 WP_370604069.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD46_RS08500 (NMD46_08460) sbmC 1738995..1739468 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  NMD46_RS08505 (NMD46_08465) yeeA 1739667..1740725 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD46_RS08510 (NMD46_08470) tmaR 1740897..1741226 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD46_RS08515 (NMD46_08475) - 1741327..1741503 (-) 177 Protein_1663 EutP/PduV family microcompartment system protein -
  NMD46_RS08520 (NMD46_08480) cobU 1741685..1742230 (+) 546 WP_370604071.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=607286 NMD46_RS08490 WP_000980610.1 1736074..1737501(-) (sbcB) [Escherichia coli strain ET650]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=607286 NMD46_RS08490 WP_000980610.1 1736074..1737501(-) (sbcB) [Escherichia coli strain ET650]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581