Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD47_RS09205 Genome accession   NZ_CP100933
Coordinates   1917787..1919214 (-) Length   475 a.a.
NCBI ID   WP_021563722.1    Uniprot ID   -
Organism   Escherichia coli strain ET665     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1912787..1924214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD47_RS09175 (NMD47_09115) yeeZ 1912842..1913666 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD47_RS09180 (NMD47_09120) yeeY 1913712..1914641 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  NMD47_RS09185 (NMD47_09125) yoeI 1914856..1914918 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD47_RS09190 (NMD47_09130) plaP 1914908..1916266 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD47_RS09195 (NMD47_09135) tsuA 1916445..1917503 (+) 1059 WP_104773790.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD47_RS09200 (NMD47_09140) tsuB 1917517..1917744 (+) 228 WP_104773791.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD47_RS09205 (NMD47_09145) sbcB 1917787..1919214 (-) 1428 WP_021563722.1 exodeoxyribonuclease I Machinery gene
  NMD47_RS09210 (NMD47_09150) dacD 1919423..1920589 (+) 1167 WP_104773830.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD47_RS09215 (NMD47_09155) - 1920755..1921975 (+) 1221 WP_000343760.1 ISL3-like element ISKox3 family transposase -
  NMD47_RS09220 (NMD47_09160) sbmC 1922032..1922505 (+) 474 WP_032224276.1 DNA gyrase inhibitor SbmC -
  NMD47_RS09225 (NMD47_09165) yeeA 1922704..1923762 (+) 1059 WP_001200891.1 FUSC family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4740

>NTDB_id=607205 NMD47_RS09205 WP_021563722.1 1917787..1919214(-) (sbcB) [Escherichia coli strain ET665]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=607205 NMD47_RS09205 WP_021563722.1 1917787..1919214(-) (sbcB) [Escherichia coli strain ET665]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGCGCAGTATTAATTACCGGTATTACCCCACAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579