Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LA331_RS12235 Genome accession   NZ_CP083658
Coordinates   2500599..2502821 (-) Length   740 a.a.
NCBI ID   WP_005232475.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2495599..2507821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS12210 (LA331_12210) - 2495689..2496150 (-) 462 WP_004781731.1 DUF2147 domain-containing protein -
  LA331_RS12215 (LA331_12215) - 2496339..2496800 (-) 462 WP_005232479.1 DUF2147 domain-containing protein -
  LA331_RS12220 (LA331_12220) - 2497079..2497528 (-) 450 WP_005232477.1 DUF2147 domain-containing protein -
  LA331_RS12225 (LA331_12225) hslO 2497743..2498618 (-) 876 WP_004781734.1 Hsp33 family molecular chaperone HslO -
  LA331_RS12230 (LA331_12230) - 2498669..2500525 (-) 1857 WP_005232476.1 cation:proton antiporter -
  LA331_RS12235 (LA331_12235) priA 2500599..2502821 (-) 2223 WP_005232475.1 primosomal protein N' Machinery gene
  LA331_RS12240 (LA331_12240) gspF 2502971..2504176 (+) 1206 WP_005232474.1 type II secretion system inner membrane protein GspF -
  LA331_RS12245 (LA331_12245) gspG 2504360..2504743 (+) 384 WP_240904185.1 type II secretion system major pseudopilin GspG -
  LA331_RS12250 (LA331_12250) - 2505028..2505363 (+) 336 WP_005232472.1 hypothetical protein -
  LA331_RS12255 (LA331_12255) lnt 2505515..2507074 (-) 1560 WP_005232470.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83687.62 Da        Isoelectric Point: 8.5518

>NTDB_id=607198 LA331_RS12235 WP_005232475.1 2500599..2502821(-) (priA) [Acinetobacter variabilis strain FDAARGOS_1487]
MPNSVPVTAPVYRVRVAVPVHLFDCFDYSLSQEQYQQAEVGARVAVSFGRQNLVGVITEKLPLDAPIDPSFKLKAITELL
DDRAIINSQVLSVLTWSAQYYQFPIGEVIQTALPTLLRQGKPYNLLARNWKLLDHEAEAKVRRSERQQEAYRILKLHPVG
TTENLLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANPEQKHAIQQVLKYRKQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVQQGKMQVLELNQRAGTALMPKIHI
LDLKVAPKQHGISLHLIEEIKKRLAKKEQVLIFLNRRGYAPVLICGSCGWQAQCPNCDANFTVHRQPYQHLHCHHCGTIH
RMPEQCPQCQHQELATLGMGTGKVEEHLNELFPDSEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTENYRAFAKQTLTERQIAQM
PPFRYAVLIRCESKDQAQNTEFLQKHAALLRQYPDLVLDIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRSWWLNL
LQDKPSNMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=607198 LA331_RS12235 WP_005232475.1 2500599..2502821(-) (priA) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGCCAAATTCTGTTCCCGTTACTGCCCCTGTTTATCGTGTTCGTGTTGCAGTGCCGGTGCATCTGTTTGACTGTTTTGA
CTATAGCTTGAGTCAGGAACAATATCAGCAGGCAGAAGTGGGTGCCCGAGTCGCGGTTTCTTTTGGCCGGCAAAATCTGG
TCGGCGTGATTACTGAAAAATTACCGCTAGATGCTCCGATTGATCCGAGCTTCAAACTGAAAGCCATCACCGAGCTCTTA
GATGACCGTGCCATTATCAATTCCCAGGTTTTAAGTGTATTGACCTGGTCAGCACAGTATTACCAGTTTCCTATCGGGGA
AGTGATCCAGACTGCTTTGCCGACCTTATTGCGTCAGGGCAAACCTTATAACCTGCTGGCCCGAAACTGGAAATTGCTGG
ATCATGAGGCTGAAGCCAAGGTTCGCCGTTCCGAGAGGCAACAGGAAGCCTATCGGATTCTAAAACTGCATCCGGTGGGA
ACAACTGAGAATCTCTTAAATCTGGCCGGAATAGAAACAGCGACTTTAAAAGCGCTCGAAAAAAAAGGGATTTGCGAATG
TGTCCTGGAAGCACAGGATTTTAGCCCGCAACCTGTACAACTGGCCCAGATGCCATTAACGGCCAATCCGGAACAAAAAC
ATGCGATTCAGCAAGTGCTGAAATACCGCAAGCAATATCAGGCCTTTTTACTCGATGGCCTGACTGGCAGCGGTAAAACT
GAAGTCTATCTTCAGATCATGGAACAGGTACTGAAACAGGGCAAGCAGGTACTGGTACTGGTGCCTGAAATCGGACTGAC
GCCACAAACGATTAGCCGCTTTCAGTCCCGTTTCCATTGTCATATTGCCTTGCTTCACTCTGGCCTGAATGACAGTAAAC
GCTTACAAGCCTGGCAAGCCGCTGAAACCGGTAAAGCTTCCATTGTGCTTGGCACCCGTTCTGCGATTTATACACCGATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAGCATGACCTGTCTTTTAAACAGCAGGAAGGCTTTCGCTATCATGCCCG
TGATGTGGCATTGTACCGGGGACATTTACAGCAATGTCCAGTACTCTTGGGTTCGGCAACACCCAGCATTGACAGTTATG
CACTGGTGCAGCAAGGTAAAATGCAGGTACTGGAACTGAATCAACGCGCGGGTACAGCGCTGATGCCAAAAATCCATATT
CTGGATTTAAAAGTCGCGCCAAAGCAGCATGGCATCAGCCTGCATCTGATTGAAGAAATCAAAAAACGCCTGGCCAAAAA
AGAACAGGTGCTCATTTTTCTGAATCGTCGTGGTTATGCACCCGTATTGATCTGTGGCAGTTGTGGTTGGCAGGCGCAGT
GTCCGAACTGTGATGCCAATTTCACTGTGCATCGGCAACCTTATCAGCATCTGCATTGTCATCACTGTGGCACCATTCAT
CGTATGCCTGAACAATGCCCGCAATGTCAGCATCAGGAGCTGGCCACTTTAGGCATGGGCACTGGAAAAGTTGAAGAACA
TCTGAATGAGCTTTTTCCAGATTCTGAAGTGATCCGGGTCGATCGCGACTCGACCAGCCGGGTGGGTAGTTGGCAAAAGA
TCTATGACAAGATCCAGAAAAGTGAGCCTGCGATTCTGCTCGGCACGCAGATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTCACGCTGGTTGCAATTTTGGATATCGATTCTGGTCTGCTCAGTGTCGATTTCCGGGCCACAGAACGTACAGCACAATT
GATCGTACAGGTCGCAGGTCGTGCAGGACGTGGGGAACATAAAGGGGATGTATATTTACAGACCCTAAGACCTGATCATG
CGCTGCTGAATACCTTAGTCACTGAAAATTACCGCGCCTTTGCCAAGCAGACTTTGACCGAACGGCAAATCGCCCAGATG
CCTCCTTTTCGTTATGCCGTGCTGATTCGCTGTGAATCCAAAGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
TGCCCTGCTCAGGCAATATCCCGATCTGGTGCTGGACATCTGGGGTCCCATTCCTGCCCCGATGGAACGCAAGGCCGGAC
GCTATCAATCTCATATGGTGCTATTGTCCGCAGACCGTGCCCGTTTGCATTATTATGTCCGTAGCTGGTGGCTAAACCTG
TTACAGGATAAGCCATCCAATATGAAGCTGACACTGGATATCGATCCACAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.605

100

0.727