Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LA331_RS11930 Genome accession   NZ_CP083658
Coordinates   2429545..2429871 (+) Length   108 a.a.
NCBI ID   WP_104426706.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2424545..2434871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS11905 (LA331_11905) hemC 2425221..2426144 (+) 924 WP_005232550.1 hydroxymethylbilane synthase -
  LA331_RS11910 (LA331_11910) - 2426144..2426911 (+) 768 WP_005232549.1 uroporphyrinogen-III synthase -
  LA331_RS11915 (LA331_11915) - 2426919..2427758 (+) 840 WP_005232548.1 hypothetical protein -
  LA331_RS11920 (LA331_11920) - 2427765..2428958 (+) 1194 WP_005232547.1 hypothetical protein -
  LA331_RS11925 (LA331_11925) - 2428966..2429391 (+) 426 WP_005232545.1 acyl-CoA thioesterase -
  LA331_RS11930 (LA331_11930) hns 2429545..2429871 (+) 327 WP_104426706.1 H-NS family nucleoid-associated regulatory protein Regulator
  LA331_RS11935 (LA331_11935) gspN 2430058..2430801 (+) 744 WP_005232542.1 type II secretion system protein N -
  LA331_RS11940 (LA331_11940) - 2430801..2431658 (+) 858 WP_005232540.1 type II secretion system protein N -
  LA331_RS11945 (LA331_11945) gspD 2431697..2433946 (+) 2250 WP_005232538.1 type II secretion system secretin GspD -
  LA331_RS11950 (LA331_11950) - 2434009..2434668 (+) 660 WP_005232536.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12382.18 Da        Isoelectric Point: 5.9546

>NTDB_id=607197 LA331_RS11930 WP_104426706.1 2429545..2429871(+) (hns) [Acinetobacter variabilis strain FDAARGOS_1487]
MMPDITNLSVEELKRLQAEAESLIALKKDQEIEDAYHQVLEIADKVGLTIEQLLEFGASKRKKTARKSVEPRYRSKSNPE
DTWTGRGKQPRWLVAELEKGAKLEDFVI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=607197 LA331_RS11930 WP_104426706.1 2429545..2429871(+) (hns) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGATGCCAGACATTACAAATTTATCAGTTGAAGAGTTAAAACGTTTACAAGCAGAAGCTGAGTCTTTAATTGCTTTGAA
AAAAGATCAGGAAATTGAAGATGCTTATCATCAGGTATTGGAGATTGCCGATAAGGTAGGCTTAACGATTGAACAGCTTC
TTGAATTTGGTGCTTCTAAACGTAAAAAAACTGCACGTAAGTCTGTAGAGCCACGTTATCGCAGTAAAAGCAATCCGGAA
GACACCTGGACTGGTCGCGGTAAACAGCCACGCTGGTTAGTTGCTGAATTAGAGAAGGGCGCAAAACTGGAAGATTTTGT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787