Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LA331_RS09735 Genome accession   NZ_CP083658
Coordinates   1967156..1968310 (+) Length   384 a.a.
NCBI ID   WP_005233424.1    Uniprot ID   N9MRA2
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1962156..1973310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09720 (LA331_09720) - 1963864..1965930 (-) 2067 WP_005233429.1 TonB-dependent copper receptor -
  LA331_RS09725 (LA331_09725) - 1966002..1966412 (-) 411 WP_005233427.1 DUF2946 family protein -
  LA331_RS09730 (LA331_09730) def 1966505..1967035 (-) 531 WP_004780730.1 peptide deformylase -
  LA331_RS09735 (LA331_09735) tsaP 1967156..1968310 (+) 1155 WP_005233424.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LA331_RS09740 (LA331_09740) dprA 1968368..1969507 (+) 1140 Protein_1884 DNA-processing protein DprA -
  LA331_RS09745 (LA331_09745) - 1969548..1970117 (+) 570 WP_005233408.1 Sua5/YciO/YrdC/YwlC family protein -
  LA331_RS09750 (LA331_09750) - 1970515..1971426 (-) 912 WP_005233405.1 DMT family transporter -
  LA331_RS09755 (LA331_09755) - 1971754..1972296 (+) 543 WP_005233403.1 glutathione peroxidase -
  LA331_RS09760 (LA331_09760) - 1972469..1973014 (+) 546 Protein_1888 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41992.17 Da        Isoelectric Point: 9.0542

>NTDB_id=607193 LA331_RS09735 WP_005233424.1 1967156..1968310(+) (tsaP) [Acinetobacter variabilis strain FDAARGOS_1487]
MKKVLKGMPFFSALGLKNQMLALAVCVGVSMGTIYSAEAAPARNVNPPALKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYIGSTSLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTIVAADSVQGTPYILGTADQRVLAGKGQKVYARGNGLVVGQRYAVYREADPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENTVAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLESELPIKVGANIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=607193 LA331_RS09735 WP_005233424.1 1967156..1968310(+) (tsaP) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTAAAAAATCAAATGCTCGCACTGGCAGTTTGTGT
CGGAGTGAGTATGGGGACAATATATTCAGCCGAGGCAGCTCCTGCCCGCAACGTCAATCCACCTGCTTTAAAAGCCAGTG
CGCCTAATGTCTACGTGGTCAAAAAAGGCGATACATTGTGGGATATTTCAAAACGTTTCTTAAAAAATCCGGTGCGTTGG
CCAGAAATCTGGGCCAGTAACAAGCACGTGAAAAATCCACATTGGATTTTTCCAGGTGATCGCCTGTTGATGTGTGACTA
TCAAGGTCGTCCAATTATCGGTAAAGACGAAGGTGATGGCTGTGAAGGTATCATCAGTCGTTATATCGGTAGTACTTCAC
TACAACCACAGGTTCGCGTTGAATCTTTAAATAATACGATTCCAGTGATTCCATTAGCGCACATCCAGCAATGGCTTGAA
CGCTATACCATTGTGGCAGCTGATTCAGTTCAAGGCACGCCTTACATTCTCGGTACCGCAGACCAGCGCGTACTGGCAGG
TAAAGGCCAGAAGGTCTATGCCCGTGGTAACGGTCTGGTGGTTGGCCAGCGTTATGCGGTGTATCGTGAAGCAGACCCTT
ATGTCTTTACCGATGCAAATGGCAAGAAATACACGGCTGCTCTAGAGCTGCAACAGGTTGCTTCCGGAATCGCAGTACGT
GGCGAAGGTGATGTTACCACGCTGGAATTGACAGATAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTATTACCTGA
ATACGATCCGATGTTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAATACGGTTGCTGGTGGTCAGATTGTGCGTGTAC
TGGGTTCAATTGGTACAGCAGCACGTCATAGTGTCGTGACGATTGACCGTGGTACGGCACATGGGGTTCAGACTGGTCAT
GTCTTTAGCGTAAACCAGAAAGGTGAAGTCGTGACTGATCCGAAAACCAAAGAGCGCGTACAGCTTCCAGGTGAGCGCAT
TGGCAATGTGATGGTCTTTAAAACTTTTGACCAGCTGAGCTATGCTTATGTGCTGGAAAGTGAGTTACCTATCAAGGTGG
GTGCCAATATTCAAGCGCCATTGTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MRA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.792

100

0.68