Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LA331_RS08310 Genome accession   NZ_CP083658
Coordinates   1687175..1688032 (-) Length   285 a.a.
NCBI ID   WP_171065445.1    Uniprot ID   A0A8F6M5R8
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1682175..1693032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS08285 (LA331_08285) miaB 1683138..1684595 (+) 1458 WP_005233804.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LA331_RS08290 (LA331_08290) - 1684634..1685710 (+) 1077 WP_004786823.1 PhoH family protein -
  LA331_RS08295 (LA331_08295) ybeY 1685745..1686227 (+) 483 WP_005233802.1 rRNA maturation RNase YbeY -
  LA331_RS08300 (LA331_08300) - 1686320..1686619 (+) 300 WP_005233800.1 antibiotic biosynthesis monooxygenase family protein -
  LA331_RS08305 (LA331_08305) - 1686777..1687127 (+) 351 WP_005233798.1 hypothetical protein -
  LA331_RS08310 (LA331_08310) tonB2 1687175..1688032 (-) 858 WP_171065445.1 energy transducer TonB Machinery gene
  LA331_RS08315 (LA331_08315) - 1688295..1688981 (+) 687 WP_004786832.1 hypothetical protein -
  LA331_RS08320 (LA331_08320) - 1689189..1689848 (+) 660 WP_373686180.1 DUF3108 domain-containing protein -
  LA331_RS08325 (LA331_08325) - 1689939..1690514 (+) 576 WP_005233791.1 xanthine phosphoribosyltransferase -
  LA331_RS08330 (LA331_08330) - 1690910..1691371 (+) 462 WP_224213972.1 hypothetical protein -
  LA331_RS08335 (LA331_08335) wrbA 1691423..1692019 (-) 597 WP_005233787.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32744.16 Da        Isoelectric Point: 6.1603

>NTDB_id=607176 LA331_RS08310 WP_171065445.1 1687175..1688032(-) (tonB2) [Acinetobacter variabilis strain FDAARGOS_1487]
MPLVKAWWKDPIFNSAVFAAVILHVIFLTLEFGMPQDQESMTKEIAVSIRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPAPLMEQKTGEEQQESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNRYYPDAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHSLL
DEAAKSSVRKAAPFGAFDAKMSDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=607176 LA331_RS08310 WP_171065445.1 1687175..1688032(-) (tonB2) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGCCTCTGGTCAAAGCCTGGTGGAAAGATCCAATTTTTAATAGCGCCGTATTTGCAGCTGTTATTTTGCATGTGATTTT
TCTCACGCTGGAATTTGGTATGCCACAAGATCAGGAGAGCATGACTAAAGAAATTGCAGTCAGTATTCGTCAAACTGATG
AAAAAATTGAGCATGCAGATTTTCTGGCTCAAACTGACCAGCAAGGTTCAGGTAAATTTCGTGAAGCACATCGTATGTCG
AGCGATATGCCTGCACCGTTGATGGAGCAAAAGACCGGAGAAGAGCAGCAAGAAAGTCCGGACATGTTGCAACAGCAGCG
CGAATTAAGCTTTGAAGAAAAAGTACTGATGACGACTTTAAGCTGGCAAAAACAGGCAGAAGAAAATCAGCGCAAAAAAA
TGCAGGAACAGTTACAAAGTCAGTTTCAGGCCAAAGCCGCTATGGTAGCCAGTCTTGAAGCCCAATATCTGCAACGACAA
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACCGTAGATGGCATCCAGTCCAAACAGGATGTCTCTGCTGCTTATCTGGA
AAAATTCCGTCAAAAAGTGGAGTTCTATGGTAACCGCTATTATCCAGACGCGGCCAAACAGCAGAATCTGGCAGGAGAGG
TGCGTTTGATGGTGATCTTGAACCAGAACGGCGGAATCCGTGCAATTCGCTTAATTGACAGTTCAGGACATAGCTTGCTA
GATGAAGCTGCAAAATCTTCAGTACGCAAGGCAGCACCGTTCGGAGCATTTGATGCCAAGATGTCGGATATTTCCGAGTT
ACGAATCATTCGAACCTGGCGTTTTGATCCGGCTGAAGCGGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.835

97.895

0.723