Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SSDC_RS01170 Genome accession   NC_021885
Coordinates   286310..287218 (+) Length   302 a.a.
NCBI ID   WP_020915491.1    Uniprot ID   S5RLV9
Organism   Candidatus Profftella armatura     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281310..292218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSDC_RS01155 (SSDC_01120) dnaJ 282239..283360 (-) 1122 WP_020915488.1 molecular chaperone DnaJ -
  SSDC_RS01160 (SSDC_01125) dnaK 283494..285413 (-) 1920 WP_020915489.1 molecular chaperone DnaK -
  SSDC_RS01165 (SSDC_01130) grpE 285447..286130 (-) 684 WP_020915490.1 nucleotide exchange factor GrpE -
  SSDC_RS01170 (SSDC_01135) pilA 286310..287218 (+) 909 WP_020915491.1 signal recognition particle-docking protein FtsY Machinery gene
  SSDC_RS01175 (SSDC_01140) holA 287241..288266 (-) 1026 WP_020915492.1 DNA polymerase III subunit delta -
  SSDC_RS01180 (SSDC_01145) leuS 288296..290977 (-) 2682 WP_020915493.1 leucine--tRNA ligase -
  SSDC_RS01185 (SSDC_01150) lipA 291055..291936 (-) 882 WP_020915494.1 lipoyl synthase -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 34009.38 Da        Isoelectric Point: 10.3559

>NTDB_id=60716 SSDC_RS01170 WP_020915491.1 286310..287218(+) (pilA) [Candidatus Profftella armatura]
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLSELKKIIYSKKLFNTEQVRNVLHNL
LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE
KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEF
SKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN

Nucleotide


Download         Length: 909 bp        

>NTDB_id=60716 SSDC_RS01170 WP_020915491.1 286310..287218(+) (pilA) [Candidatus Profftella armatura]
ATGAAAATAAATTGGATTACGCGTTTAAAAGAAAGTTTATCTAAAACTGCTTGTAACTTAAAATCTTTGATTGTGAATAA
AAAAATTGATAAAAATTTATATAATGAACTTGAATCAGATTTATTAAAAGCAGATGTTGGATTTGAAACTACACAATTTT
TGTTAAGTGAATTAAAAAAAATTATATACTCAAAAAAATTATTTAACACAGAACAAGTTAGAAATGTTTTACATAATTTA
TTAGTAAACTTATTGAAATCATTAGAAAAACCATTAATTTTTAAAAAATGTAAACCATTTGTAATAATGATAGTTGGAGT
AAATGGAGTAGGTAAAACTACTACAATTGGTAAATTAGCGAATTATTTTAAAAAACGTAAAAAATCGGTATTATTAGCCG
CTTGTGATACTTTTCGCGCAGCTGCATATGAACAATTATTAATTTTAGGAAAATATAATGATGTTCCTGTGATATCCGAA
AAAAAAATTACTGATCCTGCCGCAATAGCTTTTAATGCGATAAATATAGCACAAAAAAAAAATACTGATATCGTAATAGT
AGATACATCTGGTAGATTATCAACTCAATCTCATTTAATGAGGGAATTAAAAAAAATTAAAAAAGTAATTGAAAAAAAAA
TATTTGAATTACCATATGAAATTTTTTTAATAATTGATGGAAATACAGGTCAAAACACATTATCTCAAATAAAAGAATTT
TCTAAAATTTTACGTATTACTGGTTTAATAATTACAAAATTAGATGGTACTACAAAAGGGGGTATATTAGCTGCGATTGC
AAAAAAATATTCTATACCTTTATATTTTATAGGTATTGGAGAAAAAATTGAAGACTTACAAATATTTAATGCAGTAGATT
TTGTAAATGCCTTATTAAATCAAAATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(21-79)

SRP54-type protein, GTPase domain (SRP54)

(99-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5RLV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.355

100

0.487

Multiple sequence alignment