Detailed information NTG0607157

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD48_RS21940
• Genome accession: NZ_CP100930
• Coordinates: 4442827..4443852 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET670
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4437827..4448852

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD48_RS21920 (NMD48_21790)	metJ	4438888..4439205 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD48_RS21925 (NMD48_21795)	yiiX	4439389..4439997 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD48_RS21930 (NMD48_21800)	rpmE	4440058..4440270 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD48_RS21935 (NMD48_21805)	priA	4440473..4442671 (+)	2199	WP_001424430.1	primosomal protein N'	Machinery gene
NMD48_RS21940 (NMD48_21810)	cytR	4442827..4443852 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD48_RS21945 (NMD48_21815)	ftsN	4443944..4444903 (+)	960	WP_000068828.1	cell division protein FtsN	-
NMD48_RS21950 (NMD48_21820)	hslV	4444996..4445526 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD48_RS21955 (NMD48_21825)	hslU	4445536..4446867 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD48_RS21960 (NMD48_21830)	menA	4446934..4447860 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD48_RS21965 (NMD48_21835)	rraA	4447953..4448438 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD48_RS21970 (NMD48_21840)	zapB	4448523..4448768 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=607157 NMD48_RS21940 WP_000644904.1 4442827..4443852(+) (cytR) [Escherichia coli strain ET670]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=607157 NMD48_RS21940 WP_000644904.1 4442827..4443852(+) (cytR) [Escherichia coli strain ET670]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628