Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMD48_RS17315 Genome accession   NZ_CP100930
Coordinates   3487142..3487747 (-) Length   201 a.a.
NCBI ID   WP_097757136.1    Uniprot ID   -
Organism   Escherichia coli strain ET670     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3482142..3492747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD48_RS17295 (NMD48_17180) aes 3482179..3483138 (+) 960 WP_000801849.1 acetyl esterase -
  NMD48_RS17300 (NMD48_17185) hemH 3483135..3484097 (-) 963 WP_001250117.1 ferrochelatase -
  NMD48_RS17305 (NMD48_17190) adk 3484333..3484977 (-) 645 WP_001220233.1 adenylate kinase -
  NMD48_RS17310 (NMD48_17195) htpG 3485158..3487032 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NMD48_RS17315 (NMD48_17200) recR 3487142..3487747 (-) 606 WP_097757136.1 recombination mediator RecR Machinery gene
  NMD48_RS17320 (NMD48_17205) ybaB 3487747..3488076 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NMD48_RS17325 (NMD48_17210) dnaX 3488129..3490060 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NMD48_RS17330 (NMD48_17215) apt 3490189..3490740 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NMD48_RS17335 (NMD48_17220) ybaN 3490893..3491270 (-) 378 WP_001188905.1 DUF454 family protein -
  NMD48_RS17340 (NMD48_17225) priC 3491340..3491867 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  NMD48_RS17345 (NMD48_17230) rsmS 3491881..3492042 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21948.03 Da        Isoelectric Point: 4.9097

>NTDB_id=607142 NMD48_RS17315 WP_097757136.1 3487142..3487747(-) (recR) [Escherichia coli strain ET670]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIELTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=607142 NMD48_RS17315 WP_097757136.1 3487142..3487747(-) (recR) [Escherichia coli strain ET670]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCTGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443