Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD49_RS09635 Genome accession   NZ_CP100927
Coordinates   1940981..1942408 (-) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain ET729     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935981..1947408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD49_RS09605 (NMD49_09545) yeeZ 1936036..1936860 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  NMD49_RS09610 (NMD49_09550) yeeY 1936906..1937835 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NMD49_RS09615 (NMD49_09555) yoeI 1938050..1938112 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD49_RS09620 (NMD49_09560) plaP 1938102..1939460 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD49_RS09625 (NMD49_09565) tsuA 1939639..1940697 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD49_RS09630 (NMD49_09570) tsuB 1940711..1940938 (+) 228 WP_061090268.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD49_RS09635 (NMD49_09575) sbcB 1940981..1942408 (-) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  NMD49_RS09640 (NMD49_09580) dacD 1942617..1943783 (+) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD49_RS09645 (NMD49_09585) sbmC 1943902..1944375 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  NMD49_RS09650 (NMD49_09590) yeeA 1944573..1945631 (+) 1059 WP_001200905.1 FUSC family protein -
  NMD49_RS09655 (NMD49_09595) tmaR 1945803..1946132 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD49_RS09660 (NMD49_09600) - 1946233..1946415 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NMD49_RS09665 (NMD49_09605) - 1946478..1946615 (+) 138 Protein_1893 transposase domain-containing protein -
  NMD49_RS09670 (NMD49_09610) - 1946904..1946996 (-) 93 Protein_1894 DUF957 domain-containing protein -
  NMD49_RS09675 (NMD49_09615) yeeW 1947030..1947224 (-) 195 WP_000988599.1 DUF5983 family protein -
  NMD49_RS09680 (NMD49_09620) cbtA 1947221..1947346 (-) 126 Protein_1896 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=607041 NMD49_RS09635 WP_000980592.1 1940981..1942408(-) (sbcB) [Escherichia coli strain ET729]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=607041 NMD49_RS09635 WP_000980592.1 1940981..1942408(-) (sbcB) [Escherichia coli strain ET729]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583