Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LA318_RS06975 Genome accession   NZ_CP083641
Coordinates   1490123..1490749 (+) Length   208 a.a.
NCBI ID   WP_088204954.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain FDAARGOS_1497     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485123..1495749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA318_RS06955 (LA318_06955) - 1485524..1487284 (-) 1761 WP_045261706.1 AAA family ATPase -
  LA318_RS06960 (LA318_06960) matP 1487470..1487922 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  LA318_RS06965 (LA318_06965) ompA 1487986..1489041 (-) 1056 WP_108780329.1 porin OmpA -
  LA318_RS06970 (LA318_06970) sulA 1489396..1489905 (-) 510 WP_088204953.1 SOS-induced cell division inhibitor SulA -
  LA318_RS06975 (LA318_06975) sxy/tfoX 1490123..1490749 (+) 627 WP_088204954.1 TfoX/Sxy family DNA transformation protein Regulator
  LA318_RS06980 (LA318_06980) yccS 1490706..1492868 (-) 2163 WP_045261705.1 YccS family putative transporter -
  LA318_RS06985 (LA318_06985) - 1492888..1493334 (-) 447 WP_041910601.1 YccF domain-containing protein -
  LA318_RS06990 (LA318_06990) helD 1493458..1495512 (+) 2055 WP_088204955.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.64 Da        Isoelectric Point: 9.2151

>NTDB_id=607041 LA318_RS06975 WP_088204954.1 1490123..1490749(+) (sxy/tfoX) [Enterobacter bugandensis strain FDAARGOS_1497]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDEGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=607041 LA318_RS06975 WP_088204954.1 1490123..1490749(+) (sxy/tfoX) [Enterobacter bugandensis strain FDAARGOS_1497]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCGCTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGTGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTGATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGAGGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGTTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACACTGCGGGCGCTTGGCGCAAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGAGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.586

95.192

0.558