Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LA317_RS10495 Genome accession   NZ_CP083640
Coordinates   2183670..2184296 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain FDAARGOS_1498     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2178670..2189296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA317_RS10475 (LA317_10475) - 2179064..2180824 (-) 1761 WP_020884795.1 Lon protease family protein -
  LA317_RS10480 (LA317_10480) matP 2181011..2181463 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  LA317_RS10485 (LA317_10485) ompA 2181533..2182588 (-) 1056 WP_020884794.1 porin OmpA -
  LA317_RS10490 (LA317_10490) sulA 2182943..2183452 (-) 510 WP_025204536.1 SOS-induced cell division inhibitor SulA -
  LA317_RS10495 (LA317_10495) sxy/tfoX 2183670..2184296 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  LA317_RS10500 (LA317_10500) yccS 2184253..2186415 (-) 2163 WP_223398231.1 YccS family putative transporter -
  LA317_RS10505 (LA317_10505) - 2186435..2186881 (-) 447 WP_020884790.1 YccF domain-containing protein -
  LA317_RS10510 (LA317_10510) helD 2187005..2189059 (+) 2055 WP_223398230.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=607026 LA317_RS10495 WP_020884792.1 2183670..2184296(+) (sxy/tfoX) [Enterobacter ludwigii strain FDAARGOS_1498]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=607026 LA317_RS10495 WP_020884792.1 2183670..2184296(+) (sxy/tfoX) [Enterobacter ludwigii strain FDAARGOS_1498]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCATCATTCTTAACCCTGATGAAACGGGGTCGCCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577